Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U583114 in the current build, Tomato 200607 #2

Unigene SGN-U317380

Unigene Basic Information

Unigene ID:	SGN-U317380
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317380
mRNA sequence:	Length: 2308 bp

>SGN-U317380 Tomato 200607 #1 (16 members)
ATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGA
GAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAGGGCATAAGTATTCGCAAGCTATTGATCTGTA
CACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACACCAAATTGGAGGAATATGGAAGCGC
AATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAGGGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAA
GTTCAAAGATGCACTCAAGGATTTTCAACAGGTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAA
AGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGT
AGGATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATAT
GGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGA
TGGTTTCTTTACCAAGAGTCGAACACTTGAATTAGAGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGA
TTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAGGTATGCCTACCAAATAGTACTGCAAACAAGAGAAAT
GTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAGTTTTATGA
CCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTC
TCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGCTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCAT
GAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACC
TTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAAT
TGATCGGTTTTGTGAGCCCCCAGAAGAGGGGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAA
ACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCCTGCAGGAAAATAATCTAGATTTAGTGGTCCGATCTCATGAAGT
GAAGGATGAAGGTTATGAGATTGAGCATGATGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAGATGGGTAACAAGGG
TGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGCCACATCCTGATGTCAAACCAATGGCATA
TGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCA
AGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCA
GCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTA
TTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGG
TTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTG
GATTGTCGTTTGTCTGTGCCTGTGGCCAGATTACTGGTGTTTCCTACTGATTTTGTTTCGTTATTAATAATGCTTAACAGCTTCTAATGA
GCAAATCCTAACGATTTGTAAAGTTTGTACCATTAAACGCAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
pp5	type 5 protein serine/threonine phosphatase 62 kDa isoform

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	7
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (16)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101370	Jacalin-related lectin	591
2	118468	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase - Molecular Function: hydrolase activity (GO:0016787) Metallophosphoesterase - Molecular Function: hydrolase activity (GO:0016787)	107
5	131891	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase - Molecular Function: hydrolase activity (GO:0016787) Metallophosphoesterase - Molecular Function: hydrolase activity (GO:0016787) Tetratricopeptide TPR_1 Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488) Serine/threonine phosphatase PPP5 Tetratricopeptide region Protein phosphatase 5 - Molecular Function: phosphoprotein phosphatase activity (GO:0004721) - Cellular Component: nucleus (GO:0005634) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: protein amino acid dephosphorylation (GO:0006470)	6

Preceding Unigenes (2)

Unigene	Build
SGN-U218431	Lycopersicon Combined #3
SGN-U222683	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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