Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579812 in the current build, Tomato 200607 #2

Unigene SGN-U317397

Unigene Basic Information

Unigene ID:	SGN-U317397
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317397
mRNA sequence:	Length: 2323 bp

>SGN-U317397 Tomato 200607 #1 (21 members)
AAAATCACACGGGCTCTTTCCTCGAGAAAGATGAATTCCAGGCATGGGCAATACCATCGATAGTGACTTATAAAAGCGATTTCACGTAAA
TCTGAAACAGAGCAAATTAAATCTGCCGTCTCACATTTCCGTCTTCCCTCACCTGTTCACACTGACCAGTTGATCAAATCGGTAGACTGT
TGAGAAGCATGGAGCTCAAGCCAGGCCTATCAGCTTTGGTCACCGGCGGTGCCTCCGGAATTGGTAAGGCACTATGCTTGGCTCTTGCCA
AGAAGGGAGTTTTTGTTACAATTGTTGATTCCTCAGAAGAGAGAGGCAAAGAAGTTGCAGGCCTTGCCGAGAAAGAGTGCGCTGAGTTCC
ATTCTGGATTGAAATTTCCAGTTGTTATGTTCATCAGAAGTGATGTCACTAATACAGGAGAACTAAAAGCTGCTTTCGAGAAGCATTGTA
CAACATATGGAGGACTAGATATCTGTATTAACAGTGCAGGCATCGGCGATTATGTTCAATTCCACAACGATCAAACTGATGGGTCTAAGA
GTTGGAGACATGTTGTTAATGTGAACCTCGTCGCAGTTATAGATAGCACTCGTCTTGCGATTCAAGCCATGCAAACTGCTCAAAAGCCAG
GTGTAATAATCAATCTAGGCTCTGCTTCAGGACTCTATCCGATGTTTACAGGCCCTATCTATTCTGCCACCAAAGGGGGTGTTGTCATGT
TTACGAGATCACTTGCTCGTTTTAAGCGCCAAGGAATCCGCATCAATGTGCTCTGCCCTGAGTTTGTCCAAACTGATTTGGCAGAAAAGG
CTGCTGCTTCATCTATTGCTCGATTTGGAGGGTATCTCCCTATGAAACTTGTGGTGGAAGGTGCTTTTGAACTAATCAGAGATGAGAGTA
AAGCAGGGTCATGTCTTTGGATTACTAACAGAAGGGGCATGGAGTACTGGCCAACTCCTGCCGAAGAAGCAAAATACCTCCTCCGCTCTT
CAAAAGCACGCAAAAAATCTTTGGTTACAGTTCCAATGGATCTTCAGATTCCTCACAGTTTTGAAAAAGTAGTCGTTCACACATTGAGTC
ACAATTTTCGTAGTGCTACCAGAATAGTGCGCACTGAATTGAGGTTGCCTCTCAAGCCAGATCACGTTCTATTAAAAGTCATCTATGCTG
GTGTGAATGCTAGTGATGTCAACTTCAGCTCAGGGAGGTATTTCAGTGGAAATGGCAAAGATATCACCTCCCTCCTTCCACTGGATTCTG
GCTTCGAGGCTGTGGGAGTAATTGCTGCACTCGGTGATGGTGTTAGAAATTTAAAGATTGGCGTGCCTGCTGCCATCATGACTTTTGGCG
GTTATGCTGAATTTGTCATGGTCCCCACCAAACACATCCTTCCTGTAGAAAAACCAGATCCAGAAGTACTTGCAATGCTTACCTCTGGAC
TCACCGCATCAATTGCTTTGGAAAAGGCTGCTCAAATGGAGTCGGGAAAAGTTGTCCTTGTGACTGCCGCTGCAGGAGCGACAGGACAAT
TTGCAGTGCAGCTTGCAAAATTAGCTGGAAACACTGTAGTTGCAACTTGTGGAGGTTACGAAAAGGCCAAGCTTCTTAAGGATTTGGGAG
TTGATCGGGTCATTGACTACAAAGTGGAAGATATAAAAGCTGTTTTAAAGGAGGAGTTCCCTAAAGGTGCTGATATTGTCTACGAGTCCG
TTGGTGGTGAGATGTTTGACATTTGCTTGAATGCATTGGCTGTCTACGGACGACTTGTTGTCATTGGAATGATTTCTCAGTATCAAGGAG
AACATGGTTGGAAACCTCGGAATTACCCTGGAATATGCGAAAAGCTTCTAGCAAAAAGTCAAACGGTGGCTGGATTTTTCCTGATACAAT
ATGCTCACCTATGGCAAGAGCATTTGGACAGACTGGTTAATCTTTTCTCTTCTGGAAAGCTTAAGGTCGCTATAGATCCCAAACAGTTTG
TTGGCCTACATTCAGTTGCCGATGCTGTTGAGTACCTTCATTCTGGTAAAAGTGCTGGAAAGGTTGTCGTTTGTGTTGACCCGACATACG
CTAAACAACCTGCAAAACTATAAGTAGACAAGGAAAACAACTATATCCGGATCCAAGGAGATTTGAAGATGCAATAATCACTTCTGAATG
TATATGGTAGCCTTGTTGTCCGAGGAGCACTGTACAATGACAAAAGAATTGTATTTGTTTTGTAAAACAGTACTCAAACTTGTTGTAAGG
TGTCAGTATTTATTTTCAACCTATTTACGTAGAACAGAATTGCCTGCTTGAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101421	GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491)	210
2	118604	Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) GroES-like	44
5	132359	Alcohol dehydrogenase GroES-like Quinone oxidoreductase/zeta-crystallin - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Short-chain dehydrogenase/reductase SDR - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like Glucose/ribitol dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	5

Preceding Unigenes (1)

Unigene	Build
SGN-U215908	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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