Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U563435 in the current build, Tomato 200607 #2

Unigene SGN-U317694

Unigene Basic Information

Unigene ID:	SGN-U317694
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317694
mRNA sequence:	Length: 1162 bp

>SGN-U317694 Tomato 200607 #1 (19 members)
TCTCAAGCATCACAACAAAGCCAAAAAAACTTCCATTATCCTTCTCTCAATTGGTATATCACACTTGCAAAAACCAAAAAAAATAAAGGT
ATAGTTTCTTAAATACTCTTATTTGTCTAAATGGGAAGGTCACCTTGTTGTGAGAAGGCACATACAAACAAAGGAGCATGGACTAAAGAA
GAAGATGAAAGACTAATTTCTTACATTAGAGCTCATGGTGAAGGTTGTTGGAGGTCTCTTCCTAAAGCTGCTGGACTTCTTCGATGCGGT
AAAAGTTGTCGTCTCCGATGGATTAATTACTTAAGACCTGACCTTAAACGTGGTAACTTTACTGAAGAAGAAGATGAACTCATTATCAAA
CTCCATAGCCTCCTTGGAAACAAGTGGTCGCTTATAGCAGGAAGATTACCAGGAAGAACAGATAACGAGATAAAAAACTATTGGAACACA
CATATAAGACGAAAGCTCTTGAGTCGAGGTATTGATCCAACAACACATAGATCAATCAATGATCCTACTACAATACCAAAAGTTACAACG
ATTACTTTTGCTGCTGCTCATGAAAATATTAAAGATATTGATCAACAAGATGAGATGATAAATATCAAAGCTGAATTCGTTGAAACAAGC
AAAGAATCAGATAATAATGAAATAATTCAAGAAAAGTCATCATCATGTCTTCCTGACTTAAATCTTGAACTCAGAATTAGTCCTCCACAT
CATCAACAACTCGATCATCATCGTCATCATCAACGATCAAGCTCTTTATGTTTTACATGTAGTTTGGGAATTCAAAATAGTAAAGATTGC
AGTTGTGGAAGTGAAAGTAATGGAAATGGATGGAGTAATAATATGGTAAGTATGAACATTATGGCTGGTTATGACTTTTTGGGCTTGAAG
ACTAATGGTCTTTTGGACTATAGAACTTTGGAAACTAAGTGATTCGATTCGATTCGAATTTATGCATAAATCATCTTAATTTGATGTATA
TGTAGAAAAGAAAAAGAGTTTGAGGATATTATTTCTTCTAGCTAATAATTTTCTCATGGTTGTAAACTTTGCAATATAGTAATTACATTT
AATTCAAAGCAGTAAAAAAAAAAAAAAAATGATTCTATGAAGATAATTTTTCTTTTTCCTCTAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
thm27	R2R3MYB transcription factor 32	myb-related transcription factor

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	10
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (19)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (10)

Annotations (manual: 2 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101400	Homeodomain-like	294
2	118421	Myb DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-like	250
5	128932	Myb DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-like	238

Preceding Unigenes (1)

Unigene	Build
SGN-U215971	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
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Event Web URL:

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