Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579974 and SGN-U590004 in the current build, Tomato 200607 #2

Unigene SGN-U317752

Unigene Basic Information

Unigene ID:	SGN-U317752
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317752
mRNA sequence:	Length: 1559 bp

>SGN-U317752 Tomato 200607 #1 (19 members)
AAATGGCACCAAACTCAAAAACAAAAAACCAATCTTTATCTAAACAAAAAACCATTTCAGTAATGCCCACTGTGTTGATTTTCACAAAAT
TTTAGTATTTTCTTCTTATCCACATTCAATAATATTCACAAAAAATGAAACTACACAAATTCACCTAAAAATTGAAATCAACAACAAAAA
AAAATCAAATCTTGAAAACCCCCTTTTAGATAGAAGAGCAAAAAAATCAAATCTTGATTTGCCCCTTTTTGTGTTATTGTTGTTTTTAGA
TAAAAGAGCAAAAAAAATCAAATCTTGAAAACCCCTTTTCTGTTCTAATGGGTAAAGGAGGCAGTGATGAAAATATGGCTGCTTGGCTTC
TTGGTGTTAACACCCTCAAGATTCAGCCTTTCAATCTCCCTGCTTTGGGACCCCATGATGTTAGAGTTAGGATGAAGGCTGTCGGTATTT
GTGGAAGTGATGTTCATTACCTCAAGACCATGAGGTGTGCGGATTTTGTGGTTAAAGAACCAATGGTGATTGGGCATGAATGTGCCGGGA
TCATAGAGGAAGTTGGCGGTGAAGTCAAGACATTGGTTCCTGGAGATCGTGTAGCACTAGAGCCCGGAATTAGTTGTTGGAGATGTAATC
TTTGCAAAGAAGGGCGATATAATCTCTGCCCCGAGATGAAGTTCTTTGCTACTCCCCCTGTTCATGGTTCTCTTGCGAATCAGGTAGTCC
ACCCTGCAGACCTATGTTTCAAGCTCCCGGATGATATAAGTTTAGAGGAGGGAGCAATGTGTGAGCCACTTAGTGTTGGTGTTCATGCCT
GTCGGCGTGCAAATGTTGGTCCTGAGACAAACATATTAGTGCTGGGAGCTGGACCAATTGGGCTTGTCACGCTGCTTGCTGCTCGTGCTT
TTGGTGCCCCAAGAATTGTTATTGTGGATGTAGATGACTATCGTCTTTCTGTTGCAAAGAAGTTAGGAGCAGATGACATCGTCAAGGTTT
CAATCAATATTCAGGATGTAGCTACAGATATAGAAAACATTCAGAAAGCAATGGGAGGTGGAATCGACGCGAGTTTTGACTGTGCTGGCT
TTAACAAAACTATGTCGACCGCTCTTGGTGCAACTCGTCCAGGTGGCAAAGTTTGCTTGGTTGGAATGGGACATCATGAGATGACCGTTC
CTCTCACTCCAGCTGCTGCAAGGGAGGTCGACGTCATCGGCATATTTCGCTACAAGAATACATGGCCATTGTGTCTTGAGTTCTTAAGAA
GTGGTAAGATTGATGTGAAACCTTTGATCACACACAGGTTTGGATTCTCTCAAGAAGAAGTTGAAGAAGCTTTTGAAACAAGTGCTCGTG
GTGGTGATGCTATTAAAGTCATGTTTAATTTGTAAAAAAAAAAAATACTTTTTAAATTTGAGAAAATAAGTTTTTTTTTTTACCAAATAT
GTTTGTAAAATGTATATCTAAAAAAAATGTTTTTTTAATGCTTTTGAAAACTACTATGTATTAATATAAAATGGTGAAATGAAGTAGATG
GTTAACTTATTTCTGTTAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
sdh	sorbitol related enzyme	sorbitol related enzyme

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (19)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101421	GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491)	210
2	122739	GroES-related - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) - Molecular Function: NAD binding (GO:0051287) Alcohol dehydrogenase GroES-like Alcohol dehydrogenase zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) NAD-binding site Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	5
5	132925	GroES-related - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) - Molecular Function: NAD binding (GO:0051287) Alcohol dehydrogenase GroES-like Alcohol dehydrogenase zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) NAD-binding site Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	5

Preceding Unigenes (1)

Unigene	Build
SGN-U219599	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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