Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581169 in the current build, Tomato 200607 #2

Unigene SGN-U317784

Unigene Basic Information

Unigene ID:	SGN-U317784
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317784
mRNA sequence:	Length: 1126 bp

>SGN-U317784 Tomato 200607 #1 (19 members)
GGGCGATTGGCGGCCAATCGGCCGAATTGGTTTTCTTCGTTTTTATTAATTTTGCATCATGACTGGAGGCAAAGAAATCATCGACAAAAT
TAAGGAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGA
GGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGA
TGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAGCCTAACTTCTGGGCTGAACCGGA
GTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTAC
AGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCT
GTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAGGTGATGTTCCTCGGGT
TGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCAT
AGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAGGTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATAT
TAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTT
CCAATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACGTGTGCTTAGATCGTATAGTTTCTTTGAAATGTAAAATCTGAACTAGTAC
TTGCTTTTGTCGATGGTTTGGTTGGTCGTGTTACTGTATAAACGTTTTAAAGTTCCAACATCAGGAGCTGTTCGCACACGAACTTCAAAT
AAACGGAATGTTGTTTGCTAGGAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
dig3	protein phosphatase 2C

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (19)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (1)

Annotations (manual: 2 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101395	Protein phosphatase 2C-like - Molecular Function: catalytic activity (GO:0003824)	322
2	118451	Protein phosphatase 2C-like - Molecular Function: catalytic activity (GO:0003824)	125
5	129303	Protein phosphatase 2C-like - Molecular Function: catalytic activity (GO:0003824)	26

Preceding Unigenes (2)

Unigene	Build
SGN-U220926	Lycopersicon Combined #3
SGN-U226314	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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