Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U582039 in the current build, Tomato 200607 #2

Unigene SGN-U317935

Unigene Basic Information

Unigene ID:	SGN-U317935
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317935
mRNA sequence:	Length: 1474 bp

>SGN-U317935 Tomato 200607 #1 (19 members)
GGTTCAGTAAAGGCGAGGCTCCGCCTCCCACCACCGTCTAATTTGTAAATATATTCGCCGGAAACTTCTCTATCCACGCTTTCTCTATAT
CTATCATACCCTTTTTCTTAATTAATCGGTTGCTATTCCTTTGATGGCAGCGATTACGCAGAGAAAAGATTCGGATCGGATCAAAGGTCC
ATGGAGTCCTGAAGAGGACGAGTTGTTGCAGACGCTTGTTGAGAAACATGGACCTAGAAACTGGACTTTGATAAGCAAATCGGTGCCGGG
TCGATCTGGTAAATCCTGTCGTCTCCGGTGGTGTAATCAGCTTTCACCTCAAGTGGAACATCGTGCTTTTACTCCTGAAGAAGATGATAC
GATCATCAGGGCTCATGCCAAGTTTGGTAATAAATGGGCGACTATTGCCCGTTTGTTATCGGGTCGGACTGATAACGCTATAAAGAACCA
TTGGAACTCTACTCTTAAACGTAAGTGTCCTTCCATGTCCGAAGATTTAAGCTTTGAAACCCCTCAACCGCCTTTGAAAAGATCGTCTAG
TGTTGGTCCCTGTACCAATTTTTCTTCTGTTATGAATCCGGGTAGTCCGTCTGGATCCGACTTGAGTGATTCTAGTCTTTCGGGTTTTCC
CCAATCGCATGTTTACAGACCTGTTCCCCGTACCGGCGGGATTTTCCCTCTTCCTCCTCCTCCTCCGGTTAAGCAGATCGAAATTCCTCC
ATCTGTACCCGACCCACCAACATCTCTCTGCCTTTCGTTACCCGGATCCGGATCCGGATCCATCGAAAAGCCAACCCAGTCCCCTAAATC
ACCACCACTACCACCGCCTCCTTTGCCGGCGGTTGATAAACCGATTCCCCCATCCGTACCCGTAACTTGTCCACCATCGGCTTTCATGGG
TCATCTTGCTCAATCTAATCAAAGTTATGATTTTAGTGCTGCACCCAAATCAGGAGAGAAACAGTTTTTTACTCCAGAGTTCTTATCAGT
TCTGCAAGATATGATTAGAAAGGAAGTTAAGAGTTACATGTCTGGGTTTGAACAAAATGGTCTCTGCATGCAGACTGATGCAATAAGGAA
TGCAGTCATTAAGCGTATTGGCATCAGCAAGATTGAGTAATCCATCTATGATTACTGTTGAACTGTTCTATAGTCATCAACAATGGCTGC
CGCTGCTCAGCGAAATGACACCGGAGAAGAAACAATGGAAGATCGGAGCAGTCTTCCTCCCCCTTTTTTTTATTGCTTAATTACTTCCTT
AGAATTCCAATCAAAAAAAATAATTTTGCAGTAATGTACAGATGAATGAGAGGATGAGAGAAGAAAACTAAATTTAAAAATGCCCGAAAA
GATGAAAAAATTGAGAAAAATCTCATTCTCTTGTCTAATGTCGCATGATGATCTCGCTTCGATAGCGTTGCAAGAACAGGCTCATGAAAA
TTAATCTATGAATTAGGAAATTTTAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	6
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1

mRNA member sequences (19)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 3 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101400	Homeodomain-like	294
2	118421	Myb DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-like	250
5	128932	Myb DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-like	238

Preceding Unigenes (1)

Unigene	Build
SGN-U216947	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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