Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U583215 in the current build, Tomato 200607 #2

Unigene SGN-U318012

Unigene Basic Information

Unigene ID:	SGN-U318012
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318012
mRNA sequence:	Length: 1235 bp

>SGN-U318012 Tomato 200607 #1 (18 members)
CCATTGAGGAGATTTTCAGGTCTAACAAATTTGATGCTGTTATTCATTTTGCTGGACTAAAGGCGGTTGGTGAAAGTGTCGAGAAACCTC
TGATGTACTATGACAACAACCTTATTGGAACAATTACCCTCTTGGAAGTCATGGCAGCTCATGGATGCAAAAAGCTTGTGTTTTCATCGT
CAGCTACTGTTTATGGTTGGCCAAAAGTGGTTCCTTGTACTGAGGAGTTCCCCCTGAGTGCTGCAAATCCTTATGGACGGACAAAGCTCT
TCATTGAAGAAATATGCCGTGATGTACAAAACGCGGACTCTGAATGGAAAATCATATTGCTGCGGTACTTCAATCCTGTTGGTGCTCATC
CAAGTGGCCGAATTGGTGAAGATCCGCGAGGAATTCCGAACAACCTTATGCCATTTGTTCAACAAGTTGCTGTTGGCAGAAGAAAAGAGC
TGACAGTTTATGGAACTGATTATGGAACGAAGGATGGTACAGGGGTCCGTGATTACATTCATGTTATAGATTTAGCAGACGGACACATTG
CTGCCTTGCAGAAGCTATCTGATCCTTCCATAGGCTGTGAAGTGTACAACTTGGGAACTGGAAAAGGAACTTCAGTCCTTGAAATGGTGG
CCGCATTTGAGAAGGCTTCTGGAAAGAAAATTCCAATGGTTATGTCTGGTCGACGCCCTGGAGATGCTGAAATTGTATATGCTGCTACTG
AGAAAGCAGAACGCGAATTGAAGTGGAAGGCGAAATATGGCATCGAAGAGATGTGTAGGGATCAGTGGAACTGGGCTAAGAAGAATCCCT
ATGGCTATGAAGGAACTCCAGAATCTAATAACTGTCACTGAAGTCTACTTCAACTGCATAATATCGTCATATAGTCGATACGTTCCTGTT
GCTGCATCGTGTTCGAAGGGACGATTCAACGTATAGTTGTAGGGCTATTAGATGGCATTATAATGTTTATATTGTCTAACTTATATAAGT
TTCAGAATGTAATTGGAGTTTCAATGAGTTAGTAGTTAGATTATAAAAGGGAAAATCTAAGAAAGTTGATGAATAATATTTAAGCATATA
GTAGTATTTCATTTGTTCTTTCATTCCTTTTTTGTTTGTATAATAAAATAACTATCGGCATTTGAATCTCGTTTTAGCACATCATCATTG
ATTTCAACTAGTTTGAGATTGAGACGTAATCGATTAGTAACTAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	8
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (18)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (3)

Annotations (manual: 2 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101369	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	604
2	118695	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	35
5	129470	UDP-glucose 4-epimerase - Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978) - Biological Process: galactose metabolism (GO:0006012) NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287) Nucleotide sugar epimerase - Biological Process: carbohydrate metabolism (GO:0005975) - Molecular Function: racemase and epimerase activity acting on carbohydrates and derivatives (GO:0016857)	20

Preceding Unigenes (1)

Unigene	Build
SGN-U217519	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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