Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580723 in the current build, Tomato 200607 #2

Unigene SGN-U318382

Unigene Basic Information

Unigene ID:	SGN-U318382
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318382
mRNA sequence:	Length: 2311 bp

>SGN-U318382 Tomato 200607 #1 (17 members)
GTAAACAAGAGGACTAAGATTTAGCAGAGAAGCAGAAGAGCCATTTCTCTCTTTGGAGTTCGAAATGGTCGGTCCATTGCTTCGATCTCT
CTGGTCTACCACTAGGAGATCCTTCTCCTCCTCTCATTATTCTCATATCAAACCTTTATCCTATGCTCGAGCTTTCTCCACCGCCACAGC
TACCGCCCCCGTTGGCTCCGCCGCCACAGCACCCGGCGGCGCTCTGGATCCTGGCCGGCTCAGGAATGTCGCGGTTATAGCTCACGTCGA
TCATGGAAAGACTACTCTCATGGATAGGCTGCTTCGTCAGTGCGGCGCTGATATACCTCACGAGCGTGCCTTAGACTCTATTGACCTCGA
ACGAGAGCGCGGCATCACTATTGCTTCTAAGGTTACATCCATCTCGTGGAAGGACAAAGAGCTAAACATGGTGGACACTCCTGGACACGC
AGATTTTGGTGGTGAAGTTGAGAGGGTTGTTGGCATGGTTGAGGGAGCAGTCCTTGTTGTTGATGCTGGTGAAGGTCCACTTGCACAAAC
AAAATTTGTTCTTGCCAAGGCCCTTAAATATGGTTTACGCCCCATTCTTCTTCTCAATAAAGTAGACAAACCTGCAGTGACTGAAGAGAG
ATGTAATGAAGTTGAGAGCCTTGTATTTGATCTTTTCGCAAACCTTGGTGCTTCAGAGGAACAACTAGATTTTCCTGTTCTTTACGCTTC
AGCTAAAGAAGGATGGGCATCTTCCATATATACAAAAAGTCCTCCTGATGTGAAGGATATGTCACAATTGCTCAATGCTATTGTTGGGCA
TGTTCCTCCACCGAGTGCCAGCCTAGATGCCCCTTTTCAGATGTTGGTTTCCATGATGGAGAAAGATCCTTATCTCGGTCGTGTTTTGAC
GGGTCGTGTAACTTGTGGAGTTGTTCGTGTTGGTGATAAAGTACAAGGGCTGAAGAACACAGACAATGGAACTGTAAAAATTGAAGAAGG
GAAGGTTGTAAAGCTGATGAAAAAGAAGGGTATGAGAGCAGATCCAGTTGATAGTGCTGGTGCAGGTGACATAGTGTCCTTGGCAGGTTT
GTCAAGTCCAACAATTGGACACACAGTTGCGAATGCAGAGGTTATGACAGCGCTGCCCACAGTTGTGCTTGACCCCCCTACCATCTCCAT
GACTTTCGGTGTCAATGATTCTCCCTTAGCTGGTTCTGATGGTATTCATTTGACCGGAGGGAAAATTGGTGACCGGCTGCTAGCTGAATC
AGAAACGAATCTTGCCATAAATGTTCTCCCCAGTACGTCAGAATCATATGAAGTGCAGGGTAGAGGTGAACTTCAGTTAGGTATCTTAAT
TGAGAACATGAGACGTGAAGGATTTGAGCTCTCTGTCTCCCCACCTAAAGTCATGTACAAAGTAGAGAAAGGTACTAAGCTTGAGCCAAT
TGAAGAAGTGACTATTGAGGTTGATGACGAGCACGTAGGTTTGGTCATGGAAGCACTTTCTCACAGGCGAGGTGAAGTTACTGACATGGG
CCCTGTTCCTGGCAGCATGGGAAGGACTAGAATGTGTCTGACATGTCCTTCAAGAGGGCTAGTGGGCTATAGAAGCGTGTTCAGCAGTGA
CACCCGTGGCTCTGGATTTATGCATCGAGCTTTTCTGACTTATGAAAAATATCGTGGTCCTCTTGGAAATGTCAGGAAAGGAGTTCTAGT
ATCAATGGGCCGTGGGTTAATCACTGCTCATGCACTGATGGGGTTAGAACCTCGTGGAGTTCTCTTTGTGGCACCTGCAATGGAGACATA
TGATGGCATGATTATTGGAGAACATTCTCGGGATACAGATCTTGATGTCAATCCGGTTAAGGCAAAAGAACTCAACAATATAAGGTGCGC
TAGCAAGGATGAGAACGTCAAGTTAACTCCTCCCCGCCTTATGTCCCTCGAAGAAGCCATAGGATATGTTGCTTCCGATGAGCTTATTGA
GGTTACACCAAAAGCCATTAGGCTAAGAAAGAGATACTTGGAAGTGAACAAGAGAAAATCAATGAGCAAGAGGCCCAAGGATTGAAGCAT
TTTTCTCACATTTGTATAAATGAAATTTAATTTATCTTCACCTCTACTTAAATGTTCCTCATTTATACACACATCTTTACACTTATAATA
GATAGGGAAAAATTGTATAACATAAATATTCTTTTTCAAGCACTCTATCGGGAATGTATTTCAGCGTAACACAGCTTATTAAAAGCCGAG
TTACCGAAAATATAAATGCTTGAATGCAATAAAATTTTGTCCTACTTTTAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (17)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	119997	Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) Elongation factor G III and V Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	11
5	132518	Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) Elongation factor G III and V Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	5

Preceding Unigenes (2)

Unigene	Build
SGN-U219337	Lycopersicon Combined #3
SGN-U224545	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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