Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579275 in the current build, Tomato 200607 #2

Unigene SGN-U318648

Unigene Basic Information

Unigene ID:	SGN-U318648
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318648
mRNA sequence:	Length: 2848 bp

>SGN-U318648 Tomato 200607 #1 (15 members)
ATCACTTTTCGTCGTCTCTCTTGAGCCAAACCCATAGTTTTCATCGTTTCTCATTTCCATAGATCTCTACAATAAACCTTTGAATTTTAT
CGGCCACCGACCGCCGGCGAGTTCCCGGTGCTCAGATTTCTGTAACTCCGATTTAGTTATTTGAGATCTGTTAGTTGTGAAGGAGAGTGA
GTTGAAGAAGAGTCTAGAAGCTGAGCTTTGACTGATGAAGATCGAGTTAGGGTTTTCACAACTTGATGGATGATCGATATGCCTCAATTG
CGTAGTGGAGTGAGAAGAGGCCGTAAACCGATTGCTGCGATTGAACCGGAAGAAAACAACGATAACGAGAACAAGAGGGTTACAAGGAGA
ACAACTGTTGCACGGACTACGAGGCAGAGAGGAGCTGGTGGAGTTAGAGTAGGTGGAAGGAAGAAGAAGGAGACAGATAACGAGGAGAAG
GAGGTTGTACCAGTAGGTGATGAGAATACTGTAAGGAGAACAGCGTCTAGAGAAGAGGATAAGGAGAAGAAGGAAGTAGAGAAGGAGGAA
GAAGTAGGAGAAAAACAGATGGATGAATACGACAGTGGCGGTCAGAGTGGTGATAAGGGTTTGGCTGCTGAGGATGAAGGCAGCACTGCT
CCACTGCCTGAAAGGGTCCAGGTTGGTGGATCGCCAGCATATAGGATTGACAGGAAACTTGGTAAAGGAGGATTTGGTCAAGTGTTTGTA
GGTCGTCGTGCGAACCCACCCAATCCACATGAAAGAACTGGCCCAGGAGCAGTAGAGGTTGCCTTGAAATTCGAGCATAGAAGCAGCAAA
GGTTGTAACCATGGACCACCTTATGAGTGGCAGGTCTACAATGCACTTGGTGGCAGTCATGGTATACCGCGTGTTCATTACAAGGGACGT
CAAGGTGATTACTATATTATGGTTATGGATATGCTTGGTCCTAGTTTATGGGATGTCTGGAACAATAATGCCCATACGATGTCTGTTGAA
ATGGTCGCATGCATTGCCATCGAAGCAATTTCCATACTAGAGAAATTGCACTCCAGAGGGTATGTGCATGGGGATGTAAAACCTGAAAAC
TTTCTTCTTGGAACCCCTGGAACTCCTGATGAAAAAAAATTGTTTCTTGTTGACCTTGGATTGGCAACAAGGTGGCGTGATGCCTCTACC
GGCTTACATGTTGAGTATGATCAGCGGCCTGATGTCTTTAGGGGAACTGTAAGGTATGCTAGTGTGCATGCTCACCTGGGAAGGACTGGA
AGCCGACGGGATGATTTAGAGTCACTGGCTTACACACTCATCTTTCTTCTCCGAGGCCGGCTGCCTTGGCAGGGATATCAGGGAGAGAAC
AAAGGTTTCCTTGTCTGTAAGAAGAAGATGGCATCTTCTCCAGAAACTCTTTGCTGCTTCTGCCCTGCTCCGTTTAAGCATTTTGTGGAA
TATGTTGTGAACTTGAAGTTCGACGAGGAGCCTAACTATGCTAGGTATATCTCCTTATTTGATGGAGTAGTAGGTCCAAATCCAGAAATC
AGGCCAATCAACACTGACGGTGCACAGAAGCTTATATACCAAGTTGGGCAGAAAAGAGGAAGATTGACAATGGAAGAAGAAGATGATGAA
CAGCCGAAGAAGAAGGTTCGCATGGGAATGCCTGCGACACAATGGATCAGTGTTTACAATGCTCGTCGCCCAATGAAGCAAAGGTATCAC
TATAATGTTGCTGATATGAGACTAGCTCAGCACATTGAGAAAGGAAACGAAGACGGATTATTTATCAGCAGTGTGGCATCTTCTTCAAGC
TTGTGGGCACTAATAATGGATGCAGGAACTGGGTTCAGCGCCCAAGTTTATGAATTGTCACCTTTATTTCTTCATAAGGAATGGATTATG
GAGCAATGGGAGAAGAATTATTATATAAGTGCTATAGCTGGAGCTACTAATGGGAGCTCATTAGTTATCATGTCAAAGGGTACACAGTAT
CTGCAGCAGTCATACAAAGTCGGCGAGTCTTTTCCATTTAAGTGGATTAACAAAAAATGGAGAGAGGGTTTTTATGTCACTGCCATGGCA
ACTGCAGGAAGTAGATGGGCGATTGTTATGTCTCGTGGGGCTGGGTTTTCGGATCAGGTGGTGGAATTAGATTTTCTCTATCCTAGTGAA
GGGGTCCATAGGAGATGGGATGCTGGATATAGGATTACGTCAACTGCAGCCACATGGGATCAAGCTGCTTTAGTTCTAAGTGTTCCAAGA
AGGAAACCTGCAGATGAAACACAAGAGACACTTCGTACTTCTGCTTTTCCTAGCACTCATGTCAAGGAGAAATGGGCAAAAAATCTTTAC
CTTGCATCTATCTGTTATGGGCGAACTGTTTCTTGAGGCACCAAGGTTTGGCTGCTAATTTTCTTGGGTGCCGTGTGATAACCCTGAATG
TGCCTTGAGCAACATCCTTCATATTTTTCTAACTAATGGAGAAAAATAGATGATACTGTTTCGTGCTTGTCAACCCGGCTTTTCTTTTCA
TTTGGGAATGCTATTTGCAAAATCCATTGCCATCAATGTATGTGAATATTAGTATAGGCAGTTCTGGAGCTAGGATGGGAGTAATTTACA
TATTGGTTAAAGATTGTACAGCTTAAACAATAATTAGTTTCAGAGACGACCAAAACAGGATATTCTGTAGTATTGTGGACCCTGAAATTT
AATAATTTGTAAGGGATTTCAAACTGTTAGTAGTTTCATTTTCTATTTCTATGTTTCGTGCCCCTTCCCGGTTTTGGCTCATGTCAGACC
ATATATTATATCAGTTAATTCTTCACAGCAAGTTCGCGCTGAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (15)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 2 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118766	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	31
5	129244	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	29

Preceding Unigenes (2)

Unigene	Build
SGN-U218554	Lycopersicon Combined #3
SGN-U237058	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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