Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U583971 in the current build, Tomato 200607 #2

Unigene SGN-U318726

Unigene Basic Information

Unigene ID:	SGN-U318726
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318726
mRNA sequence:	Length: 3261 bp

>SGN-U318726 Tomato 200607 #1 (16 members)
AATCACAGTGGCACCACCCCACCCCCACCACGAACCCAACAAAAAAAAACAAGTACGTTATCGGGTACTTCGCCCCTGCAGCTTATCTGT
CTTGGATTGAAGTTTTCAAGCTTTACAAAGTGAGAATTATTAAATAATGGCAGTAGTGGCCTCTGCTCCTGGAAAGGTTTTGATGACTGG
TGGTTATCTTGTTCTGGAGAGGCCTAATGCTGGTATTGTACTGAGCACAAATGCTCGTTTTTATGCTATCGTGAAGCCACTTTATGACGA
AATTAAACCTGAAAGTTGGGCATGGGGTTGGACAGATGTTAAATTGACTTCTCCCCAGATGGCAAGAGAAACCATGTATAAACTGTCTCT
TAAACAGCTAAAGCTTCAGCCTGTTTCTTCAAGTGGATCAAGAAACCCCTTTGTAGAACATGCAGTGCAGTATGCTGTTGCAGCAGCCCA
TGAAAGACTTGACAAAGATAAGAAGGACAGATTGCAGACACTACTTCTGCAGGGTCTTGACATAACTATCTTGGGTTGCAATGAGTTCTA
TTCGTATCGGAATCAGATTGAAGCACATGGGCTCCCTCTTACACCTGAGTCATTGGCTTCCCTTCCGCCTTTTGCTTCGATCACTTTCAA
TGCAGAAGAATCAACTGGAGAAACTCGCAAGCCTGAAGTTGCAAAGACTGGATTAGGGTCATCAGCAGCTATGACAACTGCAGTTGTTGC
CGCCTTGCTTCATTATCTTGGTGTTGTGAACCTCTCCTCTTTGGATGAGGACCAACTCCAAGGAAAGAAAGATGTAGCTGATCTTAATGT
AGTTCATGTGATAGCTCAAACTGCTCATTGCATTGCACAGGGTAAAGTTGGCAGTGGGTTTGATGTTAGTTCTGCAGTTTATGGAAGTCA
ACGCTATATCCGCTTTTCGCCTGAAGTGCTCTCTTCTGCGCAGTTTGCAGGTATGGCTACACCACTAACAGAAGTCATTGATGATGTCCT
AAAAGCAAAGTGGGACCATGAGAGGACCAAGTTTTCATTGCCTCCTTTGATGACATTATTACTTGGAGAACCGGGCTGTGGAGGATCTTC
AACTCCATCAATGGTTGGAGCTGTTAAGAAATGGCAGAGGTCTGACCCTCAGGGTTCTCTAGAAACATGGAGAAGGTTATCTGAAGGAAA
CTCTGCTCTTGAAGCGCACCTAAATACCTTAAGTAAATTGGCAGAGAGATATTACAATGCTTATGAATGCATCATCAATGCCTGCAGCCT
ACTTCCTGCTGGAAAGTGGTTGGAGAGAGCAAATGAACCCACTCAAACAGAAATTGTTAAAGAATTATTAGGAGCTCGAGATGCTATGCT
TCGGATAAGGTATCAGATGCGGAAGATGGGAGAAGCTGCTGGAATCCCAATAGAACCAGAATCGCAATCTCAGCTTCTAGATGCTACAGT
GAATATGGAGGGAGTCTTGTTGGCTGGCATTCCTGGTGCTGGTGGATTTGATGCAGTTTTTGCAGTTACCCTGGGGGCTTCATGCGAAAA
TGTGACTCAAGCTTGGAGTTCACTTAATGTTCTCGCAATGCTAGTAAGAGAAGATCCTCATGGTGTGTCCTTGGAAAACAACGATCCTCG
AGCAAAGGAAATTACTACAGCTGTTTTTTCAATTCAGCTTGAATAATGATCTGGAAGTTGGAGATCACTTGCAGTTGTTCACTTTACTAG
TGCCATATGACTAAAACATAAGATCTTAAAATATTAGAATGTATAGATTACCTTTCTAGTTCAGGTAGGCTGAAGTTTCAAAACTGCAAG
GTCATAGTGACCTCCTCCTATTGTTTGAAGAGGGCAAGTAATTGCCATGAAAAAATAAGCCAGATGAGAGCCTGCTCTAGTTCTATGGAT
CATTGAATCAAAAAATAAATCTTGCTGGAAATGAATTTCTCTTTTACTTCATTGTTCAAAAAAAAAATTGTTGTCAAATTTTATGGATCA
AATATTTAGCTCCAGCAATGAGAGCGCGTCTATACAGGATCATATGATTTCTTGTCAATTTCTTATGGATTCCAGGATTGGCATGATTCT
GAAGTTAGGTGCTAATATTGTTTCATCTTTGAACTGCAGAAAGCATGACGATAATTATGAAAGGAGAACCTTGAGATGTTTTTATAAGTG
CAAATGCAATTGCCAGCTTTTGACAATGAGTGCTCAGTCTTTGCCTCTTTTCTTCTTCATCTACATCAAACAATACCAATGATGTATCTG
GTGAATACCCTTCAAATTTCAGTTGCCATTCCATTTGGTGAATCATATCGTAGACCTCATCACTGCAGGTATGTGACCTATCTTGTGACA
CAAACTGTAGAGTTTTCTGTCTGCTTCAACTAAGCAAGAACCAGGTACTTGAATTATCCCTTCATTAACCATTTTTGTCCGAATTGCAGA
CATCTTTTCCCACATTTTAGCTTGTGCATATATATTGCAGAGCATCACATAATCACTAGCATTTCTTGATTTCAACATGAAAAGATTCTT
GGCTGCTACTTCTCCCAACTCAACATTCTGATGAACTCTGCAAGCACTTAGCAGACTTCTCCATAAGACGTCATTTGGCTCCATTGGCAT
GCCTTTGATGAGCTCCAAAGCTTCCTTGAGCCTCCCAGTTCGTCCCAAGAGATCAACCATACACCCATAATGCTGAATTGTTGGCTCTAT
CCGATGCTCCAGTCTCATCCTGTCAAAACATTTTAGCCCTTCTTCAACCAGTCCAGCATGACTACAAGCACTCAAAACCCCAACATAAAC
AACATCATCTGGTTCTATTCTTGCTTTGAGCATTTCATGGTAGATCCTTAGAGCTTCCTCTCCACGCCCGTGCAATGCCAACCCTGAGAT
GATGGCACTATAGGACATCTGGTTCTTGTTTGCCATTCTTTGAAAGAGAAACAACCCTTTCTCTAGACATCCACATTTAACATACATGTC
TATTAAGGATGTCTCTACTATAACATTGAGACCAGTCATGTTCCTTAAAAGATATCCATGTGTTGCTTTCCCAAAATCAAGGGCATTCAA
ATGAGTACAAGCAGAAATCACACTCACCAATGTACTTTCCTCTGCCCTCCAACACCCCTCAGAGTTCATTTCAGCAAAAACTCTAAGGCA
CTCAGACCATAGTCCCAAATTAGCATTAGCTGCAATAAGTGCACTCCAAGAAGCTATAGTTCTTTGATCCATTTGCTCAAAGACAATGCA
AGATTGCCTAACCCCCTCCAC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	4
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (16)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102761	Phosphomevalonate kinase Erg8 - Molecular Function: phosphomevalonate kinase activity (GO:0004631) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: isoprenoid biosynthesis (GO:0008299) GHMP kinase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: kinase activity (GO:0016301) - Biological Process: phosphorylation (GO:0016310) GHMP kinase C terminal	10
2	120330	GHMP kinase C terminal Phosphomevalonate kinase Erg8 - Molecular Function: phosphomevalonate kinase activity (GO:0004631) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: isoprenoid biosynthesis (GO:0008299) GHMP kinase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: kinase activity (GO:0016301) - Biological Process: phosphorylation (GO:0016310)	9
5	130612	GHMP kinase C terminal Phosphomevalonate kinase Erg8 - Molecular Function: phosphomevalonate kinase activity (GO:0004631) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: isoprenoid biosynthesis (GO:0008299) GHMP kinase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: kinase activity (GO:0016301) - Biological Process: phosphorylation (GO:0016310)	9

Preceding Unigenes (3)

Unigene	Build
SGN-U221539	Lycopersicon Combined #3
SGN-U224717	Lycopersicon Combined #3
SGN-U229481	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Description:
Event Web URL:

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