Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U585015 in the current build, Tomato 200607 #2

Unigene SGN-U318727

Unigene Basic Information

Unigene ID:	SGN-U318727
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318727
mRNA sequence:	Length: 1051 bp

>SGN-U318727 Tomato 200607 #1 (14 members)
AAAAACCAAAAAGAAATAAATAAGGTTAAGGAGAGCTTCCTCCTTCTCCTACCTCAAAAATTCATCTCTGATTTTGCAATCATCTCAAAT
TAAATCTCCATTTATTCATAAACATATATAGCTGCATATAGATAGGTTTCAGAAACTTTCAGTATTTTGGATTCATAAATAGACATAACA
GAGAATGGTCGAAAGATATGGAGTGTTTTGAATCTGAGACGTTACCATGCTGCAGTGCTTAGGTTCTTACCTTTCGAGGTGTTGCGATCT
TGATTTTAAGCAATCGGGGGGCCTCGACGATCCTGAGATACTTGCACGAGAGACAGTTTTTAGCGTCAGCGAGATTGAAGCTCTTTATGA
GCTCTTTAAGAAGATAAGCAGTGCAGTGATTGATGATGGTTTAATCAACAAGGAAGAGTTTCAATTGGCACTTTTCAAGACAAATAAAAA
GGAAAGCTTGTTTGCTGACCGGGTGTTTGACTTGTTTGATACAAAACACAACGGAATCTTGGGATTTGAAGAATTTGCTCGTGCACTCTC
TGTTTTCCATCCAAACGCACCTATCGATGACAAGATTGAATTTTCTTTTCAGCTATATGATCTCAAGCAACAAGGTTTTATTGAGAGACA
AGAGGTAAAGCAAATGGTAGTGGCTACTCTTGCGGAGTCTGGTATGAACCTCTCTGATGATGTGATCGAGAGCATTATTGACAAGACTTT
TGAAGAAGCCGATACCAAGCATGATGGAAAGATCGATAAGGAGGAATGGAGAAACTTAGTGTTGCGACATCCTTCACTTTTGAAGAACAT
GACCCTCCAATATCTCAAGGACATTACTACAACGTTTCCGAGCTTTGTCTTTCATTCAAGAGTTGAGGACACCTAATTTGGGATTTGACA
AGAGAATTATGATTCCATGAACATAGTATAACATTCTGTTTGCTCTCTACATGGTTTCTTATTATTCTTTTTTGAATAGTTGTTTTGTGA
TTTATTTCTATGAATTGATTGATGTGGAGTTTCTATTGACTGATTAGGAACAAACAAAACC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	3
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1

mRNA member sequences (14)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118606	Recoverin - Molecular Function: calcium ion binding (GO:0005509) Calcium-binding EF-hand - Molecular Function: calcium ion binding (GO:0005509) EF-Hand type - Molecular Function: calcium ion binding (GO:0005509)	44
5	129091	Recoverin - Molecular Function: calcium ion binding (GO:0005509) Calcium-binding EF-hand - Molecular Function: calcium ion binding (GO:0005509) EF-Hand type - Molecular Function: calcium ion binding (GO:0005509)	43

Preceding Unigenes (1)

Unigene	Build
SGN-U217108	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer