Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U571294 in the current build, Tomato 200607 #2

Unigene SGN-U319023

Unigene Basic Information

Unigene ID:	SGN-U319023
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	319023
mRNA sequence:	Length: 1261 bp

>SGN-U319023 Tomato 200607 #1 (14 members)
AAATTGGAAGAAAAAATGTCAGTTTTTTCTTCTTCTTCTTCTTCTTCTTCATCACTTCATTTCTTCACTCAAAAGCCTAAATTCTCAGTA
GTAGAGCACATTTCTACCAGTATTAACAATACCCATTTCAATTTCAAGATTAATAACTCCATAAACCCCATAAAATCGAAACCCCATTTC
CCCATTTCTTCTCTTTTAGCTTCTTTCAGTCGAATTTCAACTCATTTTTCTACTTCTGCTGTGTCTGATGGAGCTGGGGTTGTTGGATTA
GATGAGGAAGCTGAATTGTCAGCTGAAGAGGAAATTGAAGAAGATGAAGAGAATGAGGGAGGTGAGAGTTTGGAGAAAGAAGAAGATGGG
GTTGTTGATGAGCCTAAATCGATTGAAGATGGTAGATTGTATGTGGGTAATTTGCCATTTTCAATGACACCTTCTCAATTGTCTGAAATT
TTTGCTGAAGCTGGTAAAGTTGCTAATGTTGAGATCGTTTATGATAGAGTTACAGATAGAAGTCGTGGATTTGCATTTGTTACAATGGGA
AGTGTTGAAGATGCAAAGGAGGCAGTTCGGTTGTTTGATGGATCTCAAGTTGGAGGTCGTACGGTCAAGGTAAACTTCCCCGAGGTTCCA
AGAGGAGGTGAAAGGCAAGTAATGAGTGCAAAGATAAGAAGCACCTATCAAGGTTTTGTAGACAGCCCTCACAAACTATACGTTGCGAAT
CTTAGCTGGAACCTCACGTCTCAAGGTCTGAAAGATGCTTTTGCTGACCAGCCAGGATTCTTAAGTGCAAAAGTCATCTATGACAGGGCC
TCGGGAAGATCTCGAGGTTTTGGTTTCATTACATTTTCTTCTGCTGAAGCAATGAACAATGCACTCGATACCATGAATGAAGTGGATCTT
GAAGGACGGCCATTACGACTAAATATAGCTGGGCAGAGAGATCCAGTATCTTCTCCACCAGTAGTCAAAACAAGTGAGTCCGAGAACAGT
GAAATACTCTAGTTTCGGCTCATAAGATCATCGAGATTCATAGTGGCATCGGCAATTTGGAGATATGTAGAGTTTTATATTCGGCGGAGA
CATACTTTTTCCAGCTTATGTAACTTTGATACAGGTAAGCTGTGCTACTACATTGCCTGTACATTATCTTAACTGCATAGTTAACAAATA
TTATATTTTGGTTGTAATATAACTCATCACTAGAATCAATAGAGATAACTCATTATAAAATGCTCATATATTCTATAAAAAAAAAAAAAA
A

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (14)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (3)

Annotations (manual: 2 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	118573	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	50
5	129458	Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	20

Preceding Unigenes (1)

Unigene	Build
SGN-U217513	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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