Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U569535 in the current build, Tomato 200607 #2

Unigene SGN-U319133

Unigene Basic Information

Unigene ID:	SGN-U319133
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	319133
mRNA sequence:	Length: 1587 bp

>SGN-U319133 Tomato 200607 #1 (14 members)
TTGATCGGCTCCTAACGAAAATTTATAACCTGTTCTATTGATTTTAATTCATCTGGAGTGAAAAGCAGTGATGAGCAAGACCGGCTATTA
TCTTGATTTGCGTGTGTTTCTGGTCACACTCATACTCATAATCACAACTAGGACGGCCGCTAAAGATCCGTCAACAATCCTATCAAGATT
CCAGCAGTACCTTCAGATCAATACAGCCCAACCTCACCCCAACTACTATGAAGCTGCCGAATTTATAATATCACAGGCCAAGTTACTATC
CCTCGAGTCCCAGACCCTTGAGTTCGTCAAGGGCAAACCTCTAATTCTCCTCAAATGGCCAGGCAAAGACCCTACCCTCCCTTCCATCCT
CCTTAACTCACATACCGATGTTGTCCCTTCCGAGCATCACAAGTGGACTCACCCACCTTTCTCTGCCCACTTAGATTCCACTACCGGCAA
CATCTTCGCCCGAGGTTCTCAGGATATGAAATGCGTCGGCTTGCAGTACCTCGAGGCCATTCGCAAACTCAAATCTTATGGCTTCCGCCC
CCTGCGCACTCTCTACCTCTCCTTCCTCCCCGACGAGGAGATCGGTGGAAATGATGGTGCCAGAAAGTTTGTTGATTCAGATGTCTTTGC
CAAGATGAATGTTGGGATTGTTCTTGACGAGGGCTTGGCCTCTCCCACTGACAATTATCGTGCATTCTATGGAGAGAGGTCCCCCTGGTG
GCTGGTCGTTAAGGCTGTAGGTGCTCCTGGACATGGGGCTAAGCTCTATGATAATACTGCCATGGAGAATTTACTTAAAAGTATCGAAAT
TATAAGGAGATTCAGGGCAGCGCAGTTTGATCTAGTTAAGGCAGGACAGAAAGCTGAAGGCGAAGTCATTTCTGTTAATATGGTCTTCTT
GAAAGCTGGCACCCCTTCACCCTCTGGTTTTGTCATGAACCTGCAGCCATCTGAAGCCCAAGCAGGATTTGACATCAGAGTACCACCAAC
TGCAGATCAGGCATCCTTGGAGAGGCTAATAGCTGATGAATGGGCACCTGCTTCGCGTAACATGACTTTTGAGTTCAAACAAAAGGTGAG
TGTGAACGACAAGTTAGGAAGGCCAGCTGTTACAGCTGTTGACAGTTCCAATATCTGGTGGGCACTGTTTGAAGAAGCTATCATCAAAGC
TAATGCCAGACTTGGAAAACCAGAAATATTTCCTGCATCAACAGATGCACGCTATTTTCGAGAGCGAGGCCTGCCAGCAATAGGATTTTC
TCCGATGGCAAACACTCCCATTCTTCTTCACGACCACAATGAGTTCTTGAACAAGGATGAGTATCTGAAAGGTATTGATGTTTATGAATC
AATAATCAAAACATATGCATCTTATATTCAGTATCAAAGAGATGATGCTTCGAGAGAGGAATTGTGAGCAAGTTGTATTGAAGCAACCTT
GAGCTCGTCTTGTCTTGTAGTATTGTATATATAAGTGAAGGCCGCAGAGCAGTTGGAAATCTCTGCAACATCTTTCTGCTGTACGAATAA
ACAACATGGATATTTCATAATCATTGAAGAACAGTTCCATGTAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ctd3	partialaminoacylase-1

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (14)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102030	Peptidase M20 - Biological Process: proteolysis (GO:0006508) - Molecular Function: metallopeptidase activity (GO:0008237)	24
2	120117	N-acyl-L-amino-acid amidohydrolase - Molecular Function: aminoacylase activity (GO:0004046) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: amino acid metabolism (GO:0006520) Peptidase M20 - Biological Process: proteolysis (GO:0006508) - Molecular Function: metallopeptidase activity (GO:0008237)	10
5	130408	N-acyl-L-amino-acid amidohydrolase - Molecular Function: aminoacylase activity (GO:0004046) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: amino acid metabolism (GO:0006520) Peptidase M20 - Biological Process: proteolysis (GO:0006508) - Molecular Function: metallopeptidase activity (GO:0008237)	10

Preceding Unigenes (2)

Unigene	Build
SGN-U218418	Lycopersicon Combined #3
SGN-U239605	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Web URL:

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