Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U586386 in the current build, Tomato 200607 #2

Unigene SGN-U319222

Unigene Basic Information

Unigene ID:	SGN-U319222
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	319222
mRNA sequence:	Length: 1311 bp

>SGN-U319222 Tomato 200607 #1 (12 members)
TGCTCCTCAGATATAGAGAGAGAAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCAT
GACATTCTGTTGAAAAAAGGACCTCAAGCTCACTTTTTTGTGCTTCTTCTTCTTCTTCCGTTTCTCGTCAGGTAAAGCTCAAGTAAGAGA
CAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAGGTTAAGGAG
CTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGG
AATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGGAATGAAGTAGCG
AAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAGAAC
ACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCCAGAAGGTCAAGAACAGATGGCC
TGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTAC
CCTGAGAGACTCGCTGCAGCACTTCTGTACAATCCACCGCGACTTTTTGAAACATTTTGGAGGATTGTCAAATACTTTATGGATCCCAAA
ACATTTCAAAAGGTCAAGTTTGTGTATCCAAAGAATAAGGATAGCGCGGAACTGATGAAGTCGTACTTCGACGTTGACAATCTTCCTACT
GAGTTTGGAGGAACAGCTACACTGAAATATGATCACGAGGAGTTCTCAAGGCAAATGGCTCAAGATGATGTGAAGGCCGCCAAGTTTTGG
GGTTCGGACAAACATCCCCCTGGTCCTGGTGGTAATGGTAATTACTCTGCAGTAGAAGTTGCTCCAGAACCTTAATCACTTACTCTATAA
GCCACTGCCTGAGCTTAAATGATTGCAACACTGACAAAGCTCAGTCTCTTATATGCCTAACTAAGTTCAAATAAATAATGAGGAATGTAA
GAATCATGTTCACAGACATTAGCTTATTTCAGATGAACTTTAATTGTAGGTTGTACTTTGATTTATGCAGAAATCAAAAAGCGCTAAATA
TTTAAGCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1

mRNA member sequences (12)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101424	Cellular retinaldehyde-binding/triple function C-terminal	202
2	119380	Phosphatidylinositol transfer protein-like N-terminal Cellular retinaldehyde-binding/triple function C-terminal	16
5	129716	Phosphatidylinositol transfer protein-like N-terminal Cellular retinaldehyde-binding/triple function C-terminal	16

Preceding Unigenes (1)

Unigene	Build
SGN-U217299	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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