Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577954 in the current build, Tomato 200607 #2

Unigene SGN-U319249

Unigene Basic Information

Unigene ID:	SGN-U319249
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	319249
mRNA sequence:	Length: 1099 bp

>SGN-U319249 Tomato 200607 #1 (12 members)
AAATTTTGATCTTTCTCTCACGCGCTGTCAACATTTCTCCTCGGCGATTTCCGGCGACGATCCGATTTTCCGGCGATATCCAACCGTAGA
GAACAGAGACATCCTGCTTCCCTTCGTCTTGGATCAGTCGACTTCTTCGTTTCGCAAAATCATGAATCCCGAATATGATTATTTGTTCAA
ACTTTTGTTAATAGGAGATTCAGGTGTTGGAAAGTCATGTCTTCTCCTGAGATTTGCCGATGATTCTTATTTGGACAGCTACATCAGCAC
AATTGGTGTTGACTTTAAAATACGTACTGTGGAGCAAGATGGGAAGACTATTAAACTTCAAATTTGGGACACTGCTGGACAAGAACGTTT
CAGGACAATCACAAGTAGTTACTACCGTGGGGCACATGGCATTATAATAGTTTATGATATAACTGATCAAGAAAGTTTCAACAATGTTAA
GCAATGGTTGAGTGAAATTGATCGCTATGCAAGCGAAAACGTGAACAAGCTTTTGGTTGGAAATAAGTCTGACTTGAATGATAACCGAGC
TGTGTCTTATGATACAGCAAAGGCTTTTGCTGATGAAATTGGCATTCCATTTATGGAGGCAAGTGCAAAGAGTGCCACTAATGTTGAACA
AGCTTTCATGGCAATGGCAGCTGAGATAAAGAATAGGATGGCAACCCAGCCAGCATCAAACAATGCAAAGCCACCCACCGTGCAGATACG
GGGACAACCTGTGAACCAAAAAAACGGCTGCTGTTCTTCTTAGATGTCAGATTCTGCTTGCTAGAATTGCTTCTAGAGTCACCATTCCAA
TCGCAATACATTGCTTTCGAAGCTGTGTCAGTTCCATTCTTTTCATCTACAGGTATCCAAATGGCCTATACAAACCACAAGAATTGCTTT
TCAAGTATAGGAACTCTTTCTCCCTCCTTTGATATTTTCACTTCGTTGCGTTTCCTTGTCTTAGTTGCAGTGATTATTTCTGCAGTTTCA
GGCATATATATGTTTAGAAGTTGGTTTTAGATGGGGATATATAGTGGATAGAACTGTAACGCTGTTGTACTTAACTATTATGAACTTCAA
ATAAATTGCTCAGCCAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
rab1c	small GTP-binding protein C

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (12)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 13 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101377	Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	504
2	118418	Ras Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	280
5	128935	Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Ras Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264) Ras small GTPase Rab type - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264) - Biological Process: protein transport (GO:0015031)	203

Preceding Unigenes (1)

Unigene	Build
SGN-U218001	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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