Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U574855 in the current build, Tomato 200607 #2

Unigene SGN-U319520

Unigene Basic Information

Unigene ID:	SGN-U319520
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	319520
mRNA sequence:	Length: 1437 bp

>SGN-U319520 Tomato 200607 #1 (13 members)
GCACGAGCTCACTCCCAAACCCACAATCTTCGGCTACCAATTTCCACATCCATGGCGGATTCAGCTCCTTCGCCGGAAAATTCCGCCGTC
GCAAATTCACAACCACTGACAGAATCTGACAACAAAACCTCGCAATCAGATCCATCTCCGGCACCGTCGTTATCTTCACCTCTGCCACCA
CCTCCGCCGTTGATCCAGCCTTACTCCGGTACACCTCCGTCGTTTCGTCCGGCGACGCCACCAGCACCACTACCTGGTGTTGGTGTAGCT
CCTATGTTCTCGCCTCTTCCTAACCCTAACTTGCAGCAGCAAACATTGAATTTTCCGAATCCTTCGGTTCAGCCTCCCGGAGTGAATTCT
GTGCCGCCGTCGATGATTCCAGCACCTACAGCTGGTGCTGGAGCTGTCCAGATGGGTTCGGCGCCGCAAATTATGCCACCTTATGCTATG
CCTGGACAGATGGTGAGACCATACGCTCCTATGCCTAACGGTTACCATGCTATGCCTCAACCTGCTCCACAGGGCGCCATGATTCATCCC
GGAATTCCGCGTTATGCATCACCGTACACACAGATGGCTCGACCAGTTTTTCCTCCACGCCCACTTGGTGCAGTTGGCATTATTCCTCCC
TTGATGCGCCCTCCAATCCCTATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAG
AAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAGCTCTGCGGGCCTGTT
AGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGT
GCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATGTTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTAT
GTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAG
ACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGTCTAGTACAGAAGAATCAAAGCAAGATAGTGGTGATAAAGGGAACAAAGAA
AATCTTGATGCTGCTAACTTTGGTCTGGTCACTGACGAAGATAGGCAAGCTGACAAAGAGGCCTTGGAGAAGCTCAAGGATATGATCGAG
GAAAGGCTGAAGAATAAACCATTACCACCTCCACCTCCACCTCCACAAGCACCTAAAGATGGTTCTGATAACTCATATACGGAAGACCTC
AAAGATGGAGAACCAGGTAGAGATACAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCAGACTAGTCTCTCTCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (13)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	120997	Splicing factor PWI - Biological Process: mRNA processing (GO:0006397) Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	7
5	135871		3

Preceding Unigenes (1)

Unigene	Build
SGN-U217834	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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