Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U585951 in the current build, Tomato 200607 #2

Unigene SGN-U320147

Unigene Basic Information

Unigene ID:	SGN-U320147
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	320147
mRNA sequence:	Length: 1606 bp

>SGN-U320147 Tomato 200607 #1 (12 members)
TTTCTTTCTTTCCAGTTAGCTAGATTTAGACAGCTTCTTCAAAATTTATTTGTAAAAAAAATAAAATATTTTTATGTTTGATTATTATTT
GAGGTATTAATTGAAGGTGAAATATTTATAGAAAATGGAAAGATATGAAATTCAGAAAGACATTGGTTCTGGGAATTTTGGTGTTGCTAA
GCTTGTGAAAGATAAATGGAGTGGTGAACTTTTTGCTGTCAAATATATTGAAAGAGGCAAAAAGATTGATGAGCATGTTCAAAGGGAGAT
AATGAATCACAGATCTTTGAGGCATCCGAATATCATTAGATTTAAGGAGGTATTTCTCACACCAGCTCATCTAGCAATAGTGATGGAATA
TGCTTCCGGAGGAGAGCTTTTTGAACGAATATGCAGTGCTGGAAGATTCAGTGAAGATGAGGCAAGGTTTTTCTTTCAACAACTTATATC
AGGAGTGAGTTATTGTCATTCAATGCAAATTTGCCACAGAGATCTTAAGCTTGAAAACACATTGTTAGACGGGAGCTCTACACAATGTCT
AAAAATATGCGATTTTGGCTATTCTAAGTCAGCAGCATTGCATTCACAACCAAAATCTACAGTTGGAACTCCGGCCTATATCGCACCAGA
AGTCTTATCAAGAAAAGAATATGATGGAAAGATAGCAGATGTTTGGTCTTGTGGGGTCACATTATATGTGATGCTGGTCGGCGCGTATCC
GTTTGAAGATCCTGATGATCCAAGAAACTTCAAGAAGACAATAACTAGGATATTAAGCGTACAATATTCGATTCCTTACTATGTCCGAGT
CTCCAAGGAGTGTAATCACCTCTTATCTCGGATATTCGTAGCTGATCCAGAGAAGAGGATAACGATCGAAGAAATAAAGAAGCATCCATG
GTTCTTAAAGAACTTGCCTAAAGAATTTATGAAAAAAGGAGAGGAAGCTAGTTTAGTACAAATGAATAGTGAAGAAAAACCATTACAAAG
TATTGAAGAAGCATTGGCTATAATTCAAGAAGCAAGAAAACCAGGAGAGGGATCTAAAGCAAGTGATTATTTTGTTAACAGCAGCATTAG
TATGGATCTTGATGATTTTGATACTGATGCTGATTTAGATGATGAAATTGACACAAGTGGTGATTTTGTATGTGCATTATGAGTGCTACT
TTTTGGACCATGACACTCGGAGCAAAGGTAAAGTTCTCATACACGTTCAAGCCATGAAAATAGTCACTAATGCTTGCATTATGATAGACT
GTTTGCATCACATTCTCTTACTAACGCAGGATGTTTTGTGCACCAGACTGCCCGCTATTATGAGTGATACTTTTCTTAGATAAAATGAAA
AAAGTAATTTCTATTTGTCTCTACTTGGGCCTTTAGTGTTTGTACCTTTTTTTTTTGTGTGTTTTAGTTTCATAAATCTTCAATTTGATA
GGAAGTTGAAGGTCCTTTTTAAAGATACTATATTCAAATATAGTATATCATGTATGACACCAAGGACTCCATATAGTTTTGTTTGTATTG
TTTGCAATTGTAAATAAAAATTGTGCAACTAGTTTTGAGTGTAAATTAAATATAAGATCTTTGTCAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
SRK2C	SNF1-related kinase	kinase

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1

mRNA member sequences (12)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118408	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	587
5	128941	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	167

Preceding Unigenes (1)

Unigene	Build
SGN-U218864	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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