Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U573895 in the current build, Tomato 200607 #2

Unigene SGN-U320191

Unigene Basic Information

Unigene ID:	SGN-U320191
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	320191
mRNA sequence:	Length: 2027 bp

>SGN-U320191 Tomato 200607 #1 (12 members)
GATGTCATTGAGAAGAGTAATCTCAGTAGGCAATTCCTCTTCCGTGACTGGAACATTGGGCAAGCCAAATCTACTGTTGCTGCTGCCGCT
GCTTCTTTGATCAATCCTCGCATTCGCATTGAAGCACTGCAAAACCGCGCAAGCCCTGAAACAGAAAGTGTATTTGATGATACGTTCTGG
GAGAATTTGAGTGTTGTGGTCAATGCACTAGATAATGTGAATGCCAGGCTTTACATTGATCAGAGATGTTTGTATTTTCAAAAACCGTTA
TTGGAGTCTGGGACCCTGGGTGCCAAGTGCAACACTCAGATGGTGATTCCTCACCTTACAGAAAATTATGGTGCATCAAGGGATCCACCA
GAAAAACAAGCACCTATGTGTACAGTTCACTCTTTCCCTCACAACATCGACCATTGCTTAACATGGGCCCGCTCAGAATTTGAGGGCTTG
CTAGAGAAGACACCAACTGAAGTTAATGCTTATCTGATCAATCCTACCGATTACATATCTTCTATGCAAAAGGCTGGTGATGCACAGGCC
AGGGACATTTTGGATCGTGTTCTTGAGTGCCTCGACAAAGAGAGATGTGATTCATTTGAGGACTGCATAACCTGGGCTCGCCTGAGGTTT
GAAGATTACTTTGCAGACCGTGTTAAGCAGTTGACATATACTTTTCCTGAGGATGCCGCTACAAGTAGTGGTGCTCCATTCTGGTCAGCA
CCAAAACGTTTCCCTCGACCATTGCAATTTTCTGTTGATGATGCCAGTCATCTTCAATTTCTCCTGGCAGCCTCTATGTTACGAGCAGAA
ACATTTGGCATTTCCATTCCAGATTGGGTGAACTCTCCTCAAAAGTTAGCTGAAGCTGTTGATAAAGTGATGGTCCCTGATTTCCAGCCA
AAGAAAGATGTGAAGATTGTGACAGATGAGAAAGCAACCAGCATGTCGGCATCATCCATAGATGATGCTGCAGTCATAAACGAGTTGGTG
ATGCAGCTGGAAACGTGTCGTCAGAAATTACCTTCAGGTTACAAGATGAATCCCATTCAATTTGAAAAGGACGATGACACCAACTATCAT
ATGGACTTCATTGCTGGACTTGCAAACATGAGGGCTAGAAACTATAGCATCCCTGAAGTGGATAAACTGAAGGCCAAATTCATAGCAGGG
AGGATCATTCCAGCAATTGCTACTTCTACTGCTATGGCCACTGGTCTTGTTTGTCTTGAGCTTTATAAGGTTTTGAATGGAGGTCATAAG
GTGGAGGACTACCGCAACACTTTTGCCAACTTGGCTCTCCCTTTATTTTCCATGGCTGAACCAGTTCCACCAAAGGTGATCAAGCATCAG
GACATGAGCTGGACTGTGTGGGACAGGTGGATTTTGAAAGACAATCCAACTTTGAGGGAGCTTCTTCAGTGGCTTCAAAACAAAGGTCTG
AATGCTTATAGCATCTCTTACGGGAGCTGCTTACTTTATAACAGCATGTTCCCTAAGCATAAAGAGCGGATGGATCGGAAAATGGTGGAA
CTGGCCAAGGAAGTAGCCAAGGCAGATCTGCCTCCATACAGGAAACATTTTGACGTGGTAGTGGCTTGTGAGGATGATGAAGACAACGAT
GTTGATATCCCTCAAGTCTCTATTTATTTCAGGTAGATTGTTTGTTCTTTCCTGTAACCACTCACCGGAGTAGCCTGAAATCATAGGGTG
ACAGTTGATTTTCTCCATGCTATGTTTGGTCTTTCTTGTTGGCAAAAGCTAGATAGATATATTCTATTCTATACTAGCCAGCCTGCATAC
AAAGTCAGAACCATATGTTGAGTAGTAAAATTATGACGACTGTTGAACTTCGAGCATCTGATTTATCACATGTCTCCATTTTCTTGCTCA
ACTATTTGAAGAAATATAGTTGATGTTGGTTAGTGGATTCGAAGTGATGAACTAACTATTTGCTTTGATCCATAATGTCTAAATTGCTGC
TGCTGTGATATTTACATTTGCAAACTAAAAAAAAAAAAAAAAAACTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (12)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101449	Protein of unknown function DUF537	148
2	119407	UBA/THIF-type NAD/FAD binding fold - Molecular Function: catalytic activity (GO:0003824) Ubiquitin-activating enzyme E1 - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512) - Molecular Function: ubiquitin-like activating enzyme activity (GO:0008642) Molybdenum cofactor biosynthesis Ubiquitin-activating enzyme repeat - Molecular Function: ubiquitin activating enzyme activity (GO:0004839) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	16
5	129746	UBA/THIF-type NAD/FAD binding fold - Molecular Function: catalytic activity (GO:0003824) Ubiquitin-activating enzyme E1 - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512) - Molecular Function: ubiquitin-like activating enzyme activity (GO:0008642) Molybdenum cofactor biosynthesis Ubiquitin-activating enzyme repeat - Molecular Function: ubiquitin activating enzyme activity (GO:0004839) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	16

Preceding Unigenes (2)

Unigene	Build
SGN-U226273	Lycopersicon Combined #3
SGN-U228538	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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