Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U574844 in the current build, Tomato 200607 #2

Unigene SGN-U320772

Unigene Basic Information

Unigene ID:	SGN-U320772
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	320772
mRNA sequence:	Length: 2089 bp

>SGN-U320772 Tomato 200607 #1 (10 members)
TAAATTTGAGCAGCCATGGTAGCAAAACAGTTAGATGACGAACCACAAACCCTCAACTATGAATCCAAATCTCACAAGAAACAGAAGAGA
AAGCTTGAAGACGCTGAGGTTGAAGAAGTTGTTGTAGAATCCAAAAAAGAGAAAAAGAAGAAGAAGAAGCAGAAGCCGAAGCAAGAAGAA
GATGGGTCCAATGGGAACACTGAAACTCTTGATGGGTCGAATGGAAATACTGAAATATTTGATGGGTCAGCTGAGTTATCGGAAAAGAAG
AAGTCGAAGAAGGAGAAGAAGAGTAAGGTAAAGGAAGGGAATTTGGATGATGGGTCGGATGTTACTGTTGTTAATGGGAAGGTTAAAGAA
AGTAGTACAAATGTGGTGGTTACGGGTAAGGGTGCTAATGAGTTAAAGTACAAAGCTTTAGAGAAGTTTGTGGATGCAGGGCTTCCAAGT
GAGGTGTTGGAATGTTGTAAGAATTTTGAGAAACCATCACCAATTCAATCTCATTCATGGCCTTTTCTTTTAGATGGGCGTGATTTCATT
GGCATAGCTAGAACTGGATCAGGTAAGACATTGGCTTTTGGTATTCCGGCTATTATGCACATCACGACTGAGCGGAAGAGTAAGAAGTCT
AAGAATCCTGTTTGCCTTGTGCTTTCACCTACAAGAGAGTTAGCTCAACAAATATCAGATGTTCTCTGTGAGGCTGGGAAGCCTACTGGT
GTGCAGTCAGTTTGTCTATATGGCGGAGTTGATAAGCACCATCAAAAGGCTTCTCTTAGATCTGGCGTGGATATTGTTATTGGAACCCCT
GGTCGTTTGCAAGATCTGATGGAAATGGGAGCTTGCAATTTAAAAGAGGTTTCTTTTGTGGTGCTAGATGAAGCTGATCGCATGCTTGAT
TTAGGTTTTGAACCAGCGGTCCGTGCCATATTAAGCCAAACATGCTCTGTTCGGCAGATGGTTATGTTCAGTGCTACATGGCCTCCGGAA
GTTCATCAATTAGCTCAAGAGTTCATGGATCCCAATCCAATCAAGGTAGTTGTAGGTTCAGAAGATTTGGCTGCCAACCATGATGTCATG
CAAATTGTTGAGGTCTTGGAAGATCGAGCACGGGATGAGCGTTTACAATGTTTGCTGGAAAAATACCACAAGTCTAGAAGGAATAGAGTA
TTGGTGTTTGTTTTATACAAGAAGGAAGCATCTCGTGTAGAAATTATGCTACAGAAAAGGGGTTGGAAAGTTGTCTCTATAAGTGGTGAC
AAGCAACAACATGCTCGTACTAAGGCCCTGTCACTCTTCAAGGATGGAAGCTGTCCTCTACTGATAGCTACTGATGTAGCTGCTCGAGGG
CTTGATATACCTGATGTTGAAGTTGTGATAAATTATAGCTTCCCTTTGACAACAGAGGATTATGTTCATAGAATTGGAAGAACTGGAAGG
GCTGGTAAAAAAGGTGTAGCTCATACATTCTTCACTAAAGATAACAAGGGACTTTCTGGGGAGTTGATAAATGTCCTCAGAGAAGCTGGA
CAGACTGTTCCAGCTGCCCTTCTTAACTTTGGAACCCATGTAAAGAAAAAGGAGTCCAAGCTCTATGGTGCTCATTTTAGAGAAATTGAC
GCAAATGCTCCAAAGGCCACCAAAATAAAATTTGGTGATTCTGATAATGAAGATTGAGAAAACGAATATCAATTGTGCCAGTTTGTCATT
GAGTTGTAGCAGCAGTGTAGCACAACTCCTTTGAATTGGTTCCAAGCTTCACCGTCCTGACACTACAGAATCATTTGGTGGATACACGCA
GTAGTGGATCGTTGTGAGAAGAGTGCAAGAGATGATGTCCCACAGCTATGTGCTCATGTCTAAATTTATTGCACTGCAGTGTTCTAGATA
ATAGTGTTTTAGAATCTTACTATTCTTTTATGTAATTCGTTTCATTACCAGAATACAAATGTTAACTCTTAAATGACTGATTGTATATTT
ATTGCACCTTACAATTGCTGGAGATGGGATTCTGTGCTATAAGTTTAGTATTAACTTCTGTCCTACACTCAAAAAAAGTGGAGACTTGCT
TGAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1

mRNA member sequences (10)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	118423	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	248
5	128963	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	106

Preceding Unigenes (2)

Unigene	Build
SGN-U221029	Lycopersicon Combined #3
SGN-U238789	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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