Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580371 in the current build, Tomato 200607 #2

Unigene SGN-U320931

Unigene Basic Information

Unigene ID:	SGN-U320931
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	320931
mRNA sequence:	Length: 1830 bp

>SGN-U320931 Tomato 200607 #1 (10 members)
TCGAGCTGATTAGCAGACATGCCACTTCTTCTTCTTCCATGTAAATCTTTCTCTATTTTCAATCCAATTTTGCCCCTCAACACCTCTGTT
ATTTACAACACAGCTATCCAATTCTCAGGTTTTTCCCTTTCTCCAAAATACCCACTTCCTAGAACCCCAAAATCTTCCAAGAATTTGTCA
ATCCATTGGAATTATCAAATAAATTTGCCTACCCATGTCTTGTTTTGCTCTAAAAATGAAATCTTTGAAGAATTTAGGACTACCCAGTTG
GCTGAATTGCCTGAAAGTGAAGAGCTTGAATTGCATAATAAGCCATATTTAAAGCAAATAGATAATGGGGTTGTCTCAGATGTAGAGGAG
GACCAGAAAAAAGTTAGTAAAGATGAAGTTTTGGAGCCATTTTATAAGTTATTTAAGCCTATAGAGTCTAATGAAGAAGAAAGTGATATA
GAACAGGAGGAAGAGGTTCATCCAGTTGTAGAAGAGAGTAAGAAGGTTAGTGTAGAGTATTACGAACCGAAACCGGGTGATTTGGTGGTA
GGTGTTGTGGTTTCGGGGAATGAGAATAAGCTTGATGTGAGTATTGGTGCTGACCTATTGGGTACAATGTTAACTAAGGATGTTTTGCCT
TTGTATGACAAAGAGATAGGCTATTTGCTGTGTGATTTAGAGAAGGATGCTGAGGAATTCTTGGTGAGAGGGAAAATGGGAATTCTGAGC
TATGATGATGCAGTGAGTGGGGAATCAACGCCGGGGAAGCCCGTTGTGGAGCCTGGGACTGTTCTTTTTGCTGAGGTTCTTGGAAGAACT
CTCAGTGGTCGACCACTGCTTTCAACAAGAAGGCTCTTTAGACGCATTGCTTGGCATCGAGTGAGATTAAACAACTAAATGAACCTATTG
AGGTGAAGATAACAGAGTGGAATATTGGTGGTCTTCTTACAAGAATAGAGGGCTTACGGGCTTTTCTTCCAAAGGCTGAATTGATGAACA
GAGTTAATAGCTACACCGAGCTGAAGGAGAATGTGGGGCGTCGAATTAATGTGCTTATTACCAGAATAAATGAAGAAACTAATGACTTGA
TACTTAGTGAGAAGGAAGCTTGGCAAATGTTAAATCTGCAAGAGGGGACTCTTGTGGAAGGAACAGTGAAAAGACTTTTTCCCTTTGGCG
CACAGATAAGGCTTGGTGAAACAAACCGAAGTGGCTTGCTACACATCTCAAATGTCACCCAAGCCAAGGTTACTTCCATGAGTAACTTGT
TAGCAGTTGATGAGAAGGTGAAAGTTATGGTTGTGAAGTCAATGTTTCCTGATAAAATATCTCTCAGTATAGCAAACCTTGAAAGCGAGC
CAGGGTTATTTTTATCGGACAAGGAGAGAGTATTTTCTGAAGCAAAACAGATGGCGAAGAAGTTCAGACAGAACCTACCAACTGTTTCAG
CAACAAAGAAACCGGAACCCCTTCCAACCGACAGGCTACCATTTGAAGATGAAGAAAATATGTATGCTAATTGGAAATGGTTCAAGTTTG
ATAGGGATAATGTAAACATGGAATAACCCTCATCACTAAAAATGTATCGAACTGTATATCCTTTGGGCACGTCTTTAGGTCATTAGATAG
CATCCATGACAAAGTACCATTGTTCAAAATCCCAGTTATGTTTTTTACTGAACTGTGTAAAAACTAATAATTCACATTTTGTTACTCAAC
TTTCAATTTTGACACAATTTTTAAGTTTCACATCCCTTTTTGACATATCATGCTTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAACTCGAGACTAGTTCTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (10)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101422	Agenet - Molecular Function: RNA binding (GO:0003723)	208
2	122210	RNA binding S1 - Molecular Function: RNA binding (GO:0003723) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	5
5	132426	RNA binding S1 - Molecular Function: RNA binding (GO:0003723) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	5

Preceding Unigenes (3)

Unigene	Build
SGN-U229959	Lycopersicon Combined #3
SGN-U231374	Lycopersicon Combined #3
SGN-U231547	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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