Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U567950 in the current build, Tomato 200607 #2

Unigene SGN-U322901

Unigene Basic Information

Unigene ID:	SGN-U322901
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	322901
mRNA sequence:	Length: 2139 bp

>SGN-U322901 Tomato 200607 #1 (7 members)
CTTGTGTCCAGAAAAATAAATAGTCTCATCTTATCCCGCGAAAAAAGAAAGGAACTAGATAGTAATACCCTAACGGCGAGCGACGGAGAA
TGTCTTATGTACCTCCTCACCTGAGAAATTCTGCTGCCGGAAAAACCACTACCACCCCTACTATAAACAGTATAGGCGGCAATCACTTCT
CTTCCAAACACACATCCAGAATTTCTTCTCTCGAAAAGTCTTCCAACGGTTACTCCAGTTCAGCTCGCCGGAGTTCCCTCAATTACTCCT
TGCCCAACACTTTTGCTGTCCCTGACCCCATCTTTCCTCACTGGAAGCCTTCCGAACGTGTTCTTCGTCTTAAATCCGAGCAGATAGAAG
AGATTCGACTGCGGCTTAATGTAGATGTCAATGTTTCTCCAGTCTCATGTCCTGCACCCTCACCTATTGAGTCATTTCCTGATATGTGCT
TGCATGCAAGTATAATGAAGGATATTGAAAAGCATGGCTACACTGCACCGACTTCTATTCAGGCTCAAGCCATGCCTGTTGCTCTTAGTG
GCAGGGATCTCTTGGGGTGTGCAGAAACTGGTAGTGGGAAGACTGCTGCATTCAGCATACCTATGATACAGCATTGCCTAGCTCAACAAC
CTCTTCAACGTGGTGATGGACCTTTGGCATTAGTGTTGGCACCTACAAGAGAGCTTGCACAACAAATAGAGAAAGAGGTTACGGCTTTCA
GCATGTCTTTGGATTCCTTTAAGACCGCAATTGTTGTAGGTGGGACAAACATTAGTGAGCAGAGGTCTGAGCTTCGAGCAGGAGTACATA
TAGTTGTTGCTACTCCAGGAAGACTTATAGATCATTTACAACAAGGAAATACTTCCCTCGGCAGGATTGCTTTTGTAGTTTTGGATGAGG
CTGATAGAATGCTTGACATGGGGTTTGAACCTCAGATAAGAGAGGTGATGCGAAATCTTCCGGCAAAACATCAAACACTGCTCTTCAGTG
CCACCATGCCAGCAGAAATTGAAGCATTGGCACAGGATTACTTGACTAATCCTGTGCGAATAAAAGTTGGAAAAGTAAGCAGCCCGACAG
CAAATGTTTCCCAGACTTTAGAGAAGGTACCCGAAAATGATAAGATTGATCGCCTTTTGGATTTGCTGGTTGAGGAGGCTGCTCAAGCTG
AAAAATCTGGCCATCCTTTCCCTTTGACCATTGTATTTGTGGAACGGAAGACAAAATGTGATGAAGTAGCAGAAGCTTTAACGCAGCAGG
GTTTGCTTGCAACTGCACTTCATGGTGGTCGTAGCCAAAATGAAAGAGAGGCTGCCCTTCGTGATTTCAGACATGGACCTATCAATATCT
TGGTTGCTACTGATGTTGCGTCTAGGGGGTTGGATGTCACAGGAGTTGCACATGTAATTAACCTAGATCTTCCAAAGACCATGGAAGATT
ATGTACACCGGATTGGAAGGACTGGTCGTGCAGGGTCAACGGGCCGAGCTACTTCATTCTACACTGATCGTGATATGTATCTTGTGGCTC
AAATACGAAGAGCAATAGCTGATATTGGTTCTGGCAATGATGTGACCATTGCTATGGGAAAGACTGCAAGAAGAAAGGAGAGAGAAGCTG
CAGCTGCGGAAAAAGAAGCAAGGAGTGAATTGTCTAAACTCTCTTTAGTAGGGTCCACGGTAAATGTGGAGGATAAGTATAGGCACATGA
TTGCCCCATCGATGATGAAAAAGGAGGGAGCTGCAGATGACGCTTGGGATGACTGATGTTTGTTGTATGTGCCTCTACTCTGATAGTAGT
AGCGATGCTCCAATGTGTGTACATTTGTTGTGCAAAAACATCTTTAACATGCAAGAATGGAAATCAGCAACATAAGGAGCTGCTAGCCCT
TGAAACCCTTTGTGTGTAGTATTTAGTGTTTTACACGTTCTTTGGTTCTTATCCATGAAGGGTACATTGAGCAGTTTTGCAGGCCGGGTA
GGAAATGTGCTAAAAATGACTTGTCAAGTCTTAATTCCATTTGTCTAGATTTTTGATAATACCTTACACGCACACTGTTTTATTCTGCAC
AAGGCTGTAGTAGTGGGATATTCTTGAGTATTTACATCAACTTCTTTCGGAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (7)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	118423	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	248
5	128963	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	106

Preceding Unigenes (2)

Unigene	Build
SGN-U226833	Lycopersicon Combined #3
SGN-U228289	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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