Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U573229 in the current build, Tomato 200607 #2

Unigene SGN-U323901

Unigene Basic Information

Unigene ID:	SGN-U323901
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	323901
mRNA sequence:	Length: 3275 bp

>SGN-U323901 Tomato 200607 #1 (4 members)
GGAAAAAACAATGGACAAATGGAAATATGCAAGATTAGCACAGTTCCTTTTCACTTTGTCTCTACTGTTCCTAGAGACATCTTTTGGATT
AGGTGGTAACAAGACCCTATGTTTAGATAAGGAGAGAGATGCTCTTCTTGAGTTCAAAAGAGGTCTTACTGATTCTTTTGATCATTTATC
TACATGGGGTGATGAAGAAGATAAACAAGAATGCTGCAAATGGAAGGGTATTGAATGTGACAGAAGAACAGGTCATGTAACTGTTATTGA
TCTACACAATAAGTTTACTTGTTCTGCTGGTGCCAGTGCTTGTTTTGCTCCTAGATTGACAGGTAAACTTAGCCCTTCTCTGCTTGAGTT
GGAGTACTTGAATTACTTGGACCTCAGTGTTAATGAATTTGAAAGAAGTGAAATACCAAGATTCATAGGCTCACTTAAGAGACTAGAGTA
CTTGAACCTGTCAGCTTCTTTTTTTTCTGGTGTAATTCCAATACAGTTCCAGAATCTAACTTCTTTAAGGACTCTTGATCTTGGAGAAAA
TAATCTTATAGTAAAGGACCTTAGATGGCTTTCTCATCTGTCTTCTCTAGAGTTTTTGAGTCTGAGTTCTAGCAACTTCCAAGTAAACAA
TTGGTTTCAAGAGATAACTAAGGTCCCTTCATTGAAAGAACTGGACTTGAGTGGCTGTGGACTCTCTAAGTTGGCTCCATCTCAAGCTGA
TTTAGCCAATTCTTCTTTTATATCTCTTTCTGTTCTTCATTTATGTTGTAATGAGTTTTCTTCTTCATCTGAATATAGCTGGGTATTCAA
TTTGACCACAAGCCTAACTAGCATTGACCTCCTTTATAATCAACTCAGCGGTCAAATTGATGATCGCTTTGGGACCTTGATGTATCTTGA
ACATCTTGATCTTGCTAATAACTTAAAGATTGAAGGTGGGGTTCCCAGTTCTTTTGGGAATTTGACACGTTTACGTCATCTGGACATGTC
TAATACTCAGACAGTCCAATGGCTTCCTGAGTTGTTTCTCAGGTTATCAGGCAGTAGGAAATCACTTGAGGTTTTGGGGTTGAACGAAAA
CTCATTGTTTGGTTCAATTGTTAATGCAACAAGATTTTCATCCTTAAAGAAATTATACCTGCAGAAGAATATGCTGAATGGTTCTTTTAT
GGAAAGTGCGGGACAAGTTTCTACCCTTGAGTATCTGGATTTGTCTGAAAACCAAATGAGAGGGGCATTACCAGATTTAGCATTGTTTCC
ATCATTGAGAGAGTTGCATCTTGGCTCTAATCAATTTCGAGGGAGGATACCACAAGGTATCGGAAAACTTTCACAGCTTAGAATTTTGGA
TGTCTCGTCCAATAGACTGGAAGGACTACCAGAAAGTATGGGGCAACTATCTAATCTGGAAAGTTTTGATGCCTCTTACAATGTCCTGAA
GGGAACAATTACTGAGTCCCACCTTTCAAACCTCTCCAGTTTAGTGGATTTGGACTTGTCATTCAACTCATTGGCTCTGAAGACGAGCTT
CAATTGGCTTCCTCCTTTTCAGCTACAAGTTATAAGCCTGCCGTCTTGCAATTTGGGACCTTCTTTCCCAAAATGGCTTCAAAATCAGAA
CAACTATACTGTTCTTGATATCTCTCTTGCGAGTATTTCAGACACGCTTCCAAGTTGGTTCTCTAGCTTCCCCCCCGATCTAAAGATTTT
GAATCTCTCAAACAACCAAATCAGTGGAAGAGTGTCTGACTTAATAGAGAATACATATGGGTACAGGGTTATAGATTTAAGCTATAACAA
CTTTTCAGGGGCTTTGCCACTAGTCCCTACCAATGTCCAAATATTTTACCTGCATAAAAATCAGTTTTTTGGATCCATCTCTTCAATTTG
TCGAAGTAGAACATCTCCCACTTCTCTAGACTTGTCACACAATCAATTCTCAGGAGAACTTCCAGATTGTTGGATGAACATGACAAGTCT
AGCTGTTCTTAATCTAGCTTATAACAATTTCTCTGGAGAAATTCCACATTCATTGGGTTCCTTGACAAATTTGAAGGCGTTATACATACG
CCAAAACAGTTTAAGTGGAATGTTGCCTTCTTTTTCACAATGTCAGGGGTTGCAAATCTTGGATCTTGGAGGGAATAAGTTGACAGGAAG
TATCCCTGGATGGATAGGGACTGATCTACTCAACTTGCGAATTCTAAGCCTGCGGTTCAACAGATTGCATGGCAGCATACCATCCATAAT
CTGTCAGCTTCAATTTCTTCAGATACTGGACCTTTCAGCGAATGGATTATCAGGGAAAATTCCACATTGCTTCAACAATTTCACCTTATT
GTATCAAGATAATAATTCTGGTGAGCCAATGGAATTTATAGTTCAAGGTTTCTATGGTAAATTTCCTCGTCGTTACTTGTATATTGGTGA
CCTATTGGTTCAATGGAAAAATCAAGAGTCTGAGTACAAGAATCCTTTATTATATCTGAAGACTATTGATCTTTCAAGTAATGAATTAAT
TGGAGGTGTTCCTAAAGAAATAGCTGATATGAGAGGATTGAAATCTTTGAACCTCTCAAGAAATGAGCTGAATGGAACTGTCATTGAAGG
AATAGGTCAAATGAGGATGTTGGAGTCTCTTGACATGTCAAGAAACCAGCTTTCTGGTGTGATACCGCAAGATCTTGCTAATTTGACTTT
TCTTAGTGTGTTGGACTTGTCGAACAACCAGTTATCAGGGAGAATTCCATCAAGCACTCAACTGCAAAGTTTTGATAGATCATCCTACAG
TGATAATGCTCAACTCTGTGGGCCTCCTCTTCAGGAGTGTCCTGGATATGCTCCTCCTAGCCCCCTTATTGATCATGGCAGCAACAACAA
TCCACAAGAACATGATGAGGAGGAGGAGTTTCCATCTCTGGAGTTTTATATATCAATGGTGCTAAGCTTTTTTGTTGCATTTTGGGGAAT
TTTGGGCTGTTTAATTGTCAATAGTTCTTGGAGGAATGCCTACTTCAAATTCTTGACGGACACGACAAGTTGGCTCGATATGATATCAAG
AGTCTGGTTTGCAAGACTCAAGAAAAAGCTGAGGAGGGCCCGATGAATGTCAAGTTCCTGTATACTTGTTTACTTTTCAAGAGTTTAACT
TGTTTTCTTGATCTTCTTCCTACCTGATAGGTGTTTTCCTCTTATTGTGGTTTCTATCTGTAACTCTTCTCTACAAGAAATCAGTAAACA
TGTGTATTTTCTTTGTCAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
eix1	EIX receptor 1

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (4)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P126634 (1031 Aa)

MDKWKYARLAQFLFTLSLLFLETSFGLGGNKTLCLDKERDALLEFKRGLTDSFDHLSTWGDEEDKQECCKWKGIECDRRTGHVTVIDLHN
KFTCSAGASACFAPRLTGKLSPSLLELEYLNYLDLSVNEFERSEIPRFIGSLKRLEYLNLSASFFSGVIPIQFQNLTSLRTLDLGENNLI
VKDLRWLSHLSSLEFLSLSSSNFQVNNWFQEITKVPSLKELDLSGCGLSKLAPSQADLANSSFISLSVLHLCCNEFSSSSEYSWVFNLTT
SLTSIDLLYNQLSGQIDDRFGTLMYLEHLDLANNLKIEGGVPSSFGNLTRLRHLDMSNTQTVQWLPELFLRLSGSRKSLEVLGLNENSLF
GSIVNATRFSSLKKLYLQKNMLNGSFMESAGQVSTLEYLDLSENQMRGALPDLALFPSLRELHLGSNQFRGRIPQGIGKLSQLRILDVSS
NRLEGLPESMGQLSNLESFDASYNVLKGTITESHLSNLSSLVDLDLSFNSLALKTSFNWLPPFQLQVISLPSCNLGPSFPKWLQNQNNYT
VLDISLASISDTLPSWFSSFPPDLKILNLSNNQISGRVSDLIENTYGYRVIDLSYNNFSGALPLVPTNVQIFYLHKNQFFGSISSICRSR
TSPTSLDLSHNQFSGELPDCWMNMTSLAVLNLAYNNFSGEIPHSLGSLTNLKALYIRQNSLSGMLPSFSQCQGLQILDLGGNKLTGSIPG
WIGTDXTQLANSKPAVQQIAWQHTIHNLSASISSDTGPFSNGLSGKIPHCFNNFTLLYQDNNSGEPMEFIVQGFYGKFPRRYLYIGDLLV
QWKNQESEYKNPLLYLKTIDLSSNELIGGVPKEIADMRGLKSLNLSRNELNGTVIEGIGQMRMLESLDMSRNQLSGVIPQDLANLTFLSV
LDLSNNQLSGRIPSSTQLQSFDRSSYSDNAQLCGPPLQECPGYAPPSPLIDHGSNNNPQEHDEEEEFPSLEFYISMVLSFFVAFWGILGC
LIVNSSWRNAYFKFLTDTTSWLDMISRVWFARLKKKLRRAR

SignalP predicts secretion with a score of 0.678

IPR001093 IMP dehydrogenase/GMP reductase
IPR003885 Leucine-rich repeat, cysteine-containing type
IPR001611 Leucine-rich repeat
IPR003591 Leucine-rich repeat, typical subtype
IPR007090 Leucine-rich repeat, plant specific

Prediction based on longest six frame method

>SGN-P253151 (1034 Aa)

EKTMDKWKYARLAQFLFTLSLLFLETSFGLGGNKTLCLDKERDALLEFKRGLTDSFDHLSTWGDEEDKQECCKWKGIECDRRTGHVTVID
LHNKFTCSAGASACFAPRLTGKLSPSLLELEYLNYLDLSVNEFERSEIPRFIGSLKRLEYLNLSASFFSGVIPIQFQNLTSLRTLDLGEN
NLIVKDLRWLSHLSSLEFLSLSSSNFQVNNWFQEITKVPSLKELDLSGCGLSKLAPSQADLANSSFISLSVLHLCCNEFSSSSEYSWVFN
LTTSLTSIDLLYNQLSGQIDDRFGTLMYLEHLDLANNLKIEGGVPSSFGNLTRLRHLDMSNTQTVQWLPELFLRLSGSRKSLEVLGLNEN
SLFGSIVNATRFSSLKKLYLQKNMLNGSFMESAGQVSTLEYLDLSENQMRGALPDLALFPSLRELHLGSNQFRGRIPQGIGKLSQLRILD
VSSNRLEGLPESMGQLSNLESFDASYNVLKGTITESHLSNLSSLVDLDLSFNSLALKTSFNWLPPFQLQVISLPSCNLGPSFPKWLQNQN
NYTVLDISLASISDTLPSWFSSFPPDLKILNLSNNQISGRVSDLIENTYGYRVIDLSYNNFSGALPLVPTNVQIFYLHKNQFFGSISSIC
RSRTSPTSLDLSHNQFSGELPDCWMNMTSLAVLNLAYNNFSGEIPHSLGSLTNLKALYIRQNSLSGMLPSFSQCQGLQILDLGGNKLTGS
IPGWIGTDLLNLRILSLRFNRLHGSIPSIICQLQFLQILDLSANGLSGKIPHCFNNFTLLYQDNNSGEPMEFIVQGFYGKFPRRYLYIGD
LLVQWKNQESEYKNPLLYLKTIDLSSNELIGGVPKEIADMRGLKSLNLSRNELNGTVIEGIGQMRMLESLDMSRNQLSGVIPQDLANLTF
LSVLDLSNNQLSGRIPSSTQLQSFDRSSYSDNAQLCGPPLQECPGYAPPSPLIDHGSNNNPQEHDEEEEFPSLEFYISMVLSFFVAFWGI
LGCLIVNSSWRNAYFKFLTDTTSWLDMISRVWFARLKKKLRRAR

SignalP predicts secretion with a score of 0.587

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118407	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	1853
5	128987	Leucine-rich repeat Leucine-rich repeat plant specific	79

Preceding Unigenes (2)

Unigene	Build
SGN-U236061	Lycopersicon Combined #3
SGN-U236699	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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