Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577315 in the current build, Tomato 200607 #2

Unigene SGN-U324936

Unigene Basic Information

Unigene ID:	SGN-U324936
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	324936
mRNA sequence:	Length: 995 bp

>SGN-U324936 Tomato 200607 #1 (5 members)
TTGGGCTCATTTCTAAACCAGTGGGTCATAGTAAAGGACCTATTTTGCATAATCCAACGTTTAGACATGTGGGTTATAATGGAATTTATG
TTCCAATGTTTGTGGATGATCTTAAGGAGTTCTTTAGGGTCTACTCAAGTCCCGACTTTGCTGGTTTCAGTGTTGGAATTCCATACAAGG
AAGCAGTGGTGAGCTTTTGTGATGAAGTCGATCCATTGGCTGAGTCCATAGGGGCTGTAAATACCATCATACGGAGGCCTTGCGATGGGA
AGTTAATTGGTTACAACACAGATTGTGAGGCTTCTATAACAGCCATCGAGGATGCTTTGAAAGCAAATGGAGAAGCTTTAGTTCCTTGTT
CACTCGCTAGGAAAATGTTTGTGTTGGTGGGTGCTGGAGGTGCAGGAAGAGCTCTTGCATTCGGAGCCAAGAGCAGGGGAGCTCGAATTG
TGATTTTTGACATTGATTTTGATAGAGCAAAAGCTCTTGCTGCCGCAGTTAGTGGTGAAGCTCTGCCATTTGAAAAATTAGCTTCTTTTC
AGCCAGAGAAAGGTGCAATCCTTGCGAATGCAACACCTATAGGAATGCATCCAAATAAAGATAGGATACCTGTGCCTGAGGGAAGCTTAA
AGGATTATGTAGTGGTGTTTGATGCTGTATATACACCACGAAGGACTACTCTACTGGAAGATGCGGAGGCTGCTGGAGCACTCATTGTAA
GTGGAGTTGAAATGTTTCTTAGACAGGCTATAGGACAGTTCAACCTTTTCACAGGAAGTAAAGCACCAGAAGAATTCATGCGTGACATCG
TTATGTCAAAATTCTAATCATCAACAATTTCAATTAAATTTGTGAAACGCCAACAAGGCTGGCAAAAATTGCATATTTTTTATTCATGAC
ACAAAATCTTGTTAGTATTTTCTTGGATAGCAAAAACTATTGTTGTAATTCAACAATTTGTGCAAATTTGATTCATTTTAAAAAAAAAAA
AAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (5)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102401	Shikimate/quinate 5-dehydrogenase - Molecular Function: shikimate 5-dehydrogenase activity (GO:0004764) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: aromatic amino acid family biosynthesis shikimate pathway (GO:0016089) Quinate/Shikimate 5-dehydrogenase - Molecular Function: shikimate 5-dehydrogenase activity (GO:0004764) - Biological Process: aromatic amino acid family biosynthesis shikimate pathway (GO:0016089) - Molecular Function: NADP binding (GO:0050661) NAD-binding site Dehydroquinase class I - Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855) - Biological Process: aromatic amino acid family biosynthesis (GO:0009073) Shikimate dehydrogenase substrate binding N-terminal	15
2	119505	Dehydroquinase class I - Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855) - Biological Process: aromatic amino acid family biosynthesis (GO:0009073) Shikimate/quinate 5-dehydrogenase - Molecular Function: shikimate 5-dehydrogenase activity (GO:0004764) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: aromatic amino acid family biosynthesis shikimate pathway (GO:0016089) NAD-binding site Quinate/Shikimate 5-dehydrogenase - Molecular Function: shikimate 5-dehydrogenase activity (GO:0004764) - Biological Process: aromatic amino acid family biosynthesis shikimate pathway (GO:0016089) - Molecular Function: NADP binding (GO:0050661) Shikimate dehydrogenase substrate binding N-terminal	15
5	130168	Dehydroquinase class I - Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855) - Biological Process: aromatic amino acid family biosynthesis (GO:0009073) Shikimate/quinate 5-dehydrogenase - Molecular Function: shikimate 5-dehydrogenase activity (GO:0004764) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: aromatic amino acid family biosynthesis shikimate pathway (GO:0016089) NAD-binding site Quinate/Shikimate 5-dehydrogenase - Molecular Function: shikimate 5-dehydrogenase activity (GO:0004764) - Biological Process: aromatic amino acid family biosynthesis shikimate pathway (GO:0016089) - Molecular Function: NADP binding (GO:0050661) Shikimate dehydrogenase substrate binding N-terminal	12

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U224028	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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