Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U585125 in the current build, Tomato 200607 #2

Unigene SGN-U327381

Unigene Basic Information

Unigene ID:	SGN-U327381
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	327381
mRNA sequence:	Length: 2880 bp

>SGN-U327381 Tomato 200607 #1 (4 members)
TTTTTTTTTTTTTGAGAAAAAATTAATTTTATTTTTTTAGAGTTATGGGAGATAATAGAGGATTAGGTGTTTTTGGAGTATCAATGTGTG
GTGCAGCACAAGAAATAGAACAATTATCAAGAGAAAGTAGTCATTATAGTCTTTCTACTGGAATTTTACCTTCACTTGGTGCAAGAAGTA
ATAGAAGAGTTAAGCTTAAAAGATTTATTATTTCACCTTATGATCGACAATACAGGTTATGGGAGACATTTCTAGTTGTGCTGGTTGTTT
ACACTGCTTGGGTGTCCCCGTTCGAGTTTGGCTTTCTAGGAAAACCAGCAGGGCCACTTGCTAAGACGGACAATGTAGTCAATGGATTCT
TCGCGATTGATATCATTCTTACCTTCTTCGTAGCTTTCTTGGATAGAACCACTTATCTACTTGTCGATGAACATAAAAAGATTGCTTGGA
AGTATATGAGTACTTGGTTCTTATTCGATGTCATATCAACAATCCCTTCAGAACTTGCTGTGAAGATTTCTCCAAAACCTTTACGTCAGT
ATGGATTATTCAATATGCTTCGTTTGTGGCGTCTAAGAAGAGTTAGTGCATTGTTTGCAAGATTGGAGAAAGATAGGAACTTCAATTACT
TTTGGGTTCGATGTGCAAAGCTTGTTTGTGTCACTCTTTTTGCTGTTCATTGTGCCGGATGCTTTTATTATCTTATCGCGGTTCATTATC
CTGATCCAAAGAGGACATGGATCGGAGTTGCTATGGATGACTTCCTTAATCAGAGCTTATGGATTCGTTATGTCACTTCTATTTATTGGT
CGATAACTACTCTCACTACAGTCGGTTATGGAGATCTGCATCCAGAGAATACGCGGGAAATGATCTTTGATATTTTCTACATGCTCTTTA
ACTTGGGATTGACAGCATACTTAATAGGAAATATGACTAACTTGGTTGTGCACGGGACGAGTAGGACTAGAAAATTTAGAGATACAATTC
AAGCTGCTTCGAGCTTTGCACAGAGGAACCAATTGCCTGCTCGACTCCAAGATCAGATGCTTGCACACTTGTGCTTGAAGTTCAGAACAG
ACTCGGAAGGGCTGCAGCAGCAAGAGACACTCGAGTCTCTTCCTAAAGCTATCCGTTCAAGCGTTTCACATTTTCTTTTCTACTCTTTAG
TAGATAAGGTTTACCTGTTTCGTGGAGTGTCAAATGATCTACTCTTCCAGCTGGTCTCCGAGATGAAGGCAGAGTACTTTCCTCCCAAAG
AGGATGTCATTTTGCAGAATGAAGCACCAACCGACTTCTATATTCTTGTAACAGGAGCTGTGGATCTAGTAGTGCTTAAAAACGGAGTTG
AACAGGTTGTTGGGGAGGTCAGGGCTGGTGATCTTTGTGGTGAAATCGGGGTTCTTTGTTATAGGCCTCAACTATTTACAGTACGAACGA
AGAGACTGTGCCAGCTACTACGTATGAATCGTACCACATTTCTGAATATCGTCCAGGCCAATGTTGGGGACGGGACAATAATCATGAATA
ATCTACTTCAGCATTTGAAGGAAATGAAGAATCCAATTATGGAGGGTGTTCTACTTGAGACCGAGCATATGTTAGCTCGCGGTAGAATGG
ACTTGCCTCTCACCCTTTGCTTTGCAACACTTAGAAGTGATGACTTATTGTTGCATCACTTGTTAAAGCGCGGTCTTGATCCAAATGAAT
CAGATAACAATGGAAGATCCGCGTTGCATATCGCTGCGTCTAAAGGCATTGAGAACTGTGTGGTTCTTCTGCTCGATTTCGGGGCTGATC
CCAATAGTAGAGATTCAGAAGGCAATGTGCCATTGTGGGAGGCTATCATGGGGAAGCATGAATCAGTTATCCAGTTACTCGTTGACAACG
GTGCTAAACTATCAGCTGGTGATGTGGGACATTTCGCCTGCGTTGCTGTTGAACAAAACAACTTGAGTTTGCTCAAGGAGATTGTCCGTT
ATGGCGGGGATGTCACGCTTCCCAAGATCAACGGTTCATCAGCTCTCCATGTAGCTGTCTGTGAAGGTAACATAGAAATAGTAAAGTACC
TCTTGGATCGAGGGGCTAACGTTGATCAACCAGACGAACATAATTGGACCCCTCGGGACCTTGCTGAGCAACAAGGACATGAAGACATCA
AAGAACTCTTCGAATCCAGAGTAATGATGAGAACTCGATCCGTTGATCCTATCCCAGAGGAACGAGGGGTTCGATTTCTTGGTAGGTTCA
AAAGTGAGCCAACAATCTCCCCTGCATCACATGGAGTCTCATTTCTAGGACTAGATGGATCATTAGGACGATCACGTCCTAGACGCAGGT
CTAATAACTTCCACAACTCATTATTCGGGATAATGTCAGCAAAGCAGACCAATGAGCACGACGTGCTTTTATCTGCAAACGACACTAATG
TAAGTATCACGACAACCAAGACTTATGCTCCTCGAGTGATCGTGTGTTGCCCTGAGAAAGGAGACAATGGGGGAAAACTCATTTTACTCC
CACAGAGTTTTAAAGAGCTACTTCAAATTGGTTCTAGTAGATATGGTATCTCTCAGGCCAAAGTTGTTAGCAAAGATGGAGCTGAAATCG
ATGAAATCGAGTTGATCAGAGATGGTGATCGTTTAGTTTTTGTTAGAGATAAAGAAAACAATATCGATGAAGCTAAATCATCATAATTGT
AGTGAGTTGAGGTGTAAACCAAAATTGTTCTTTATTTTTGTAGTGAATTGAGTGTAAACTAGTTCACAGCCAATTTGTGGAACATGTAAA
GCTCAGAATGAGAAAATATGAATGTACATTATCAGATACCTCTTTTGTCTAATATACAAATATTCATAGTTCAGAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
lkt1	LELKT1GEN L.esculentum potassium channel

Genomic locations (0)

None

Library representation (3)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (4)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P130062 (882 Aa)

MGDNRGLGVFGVSMCGAAQEIEQLSRESSHYSLSTGILPSLGARSNRRVKLKRFIISPYDRQYRLWETFLVVLVVYTAWVSPFEFGFLGK
PAGPLAKTDNVVNGFFAIDIILTFFVAFLDRTTYLLVDEHKKIAWKYMSTWFLFDVISTIPSELAVKISPKPLRQYGLFNMLRLWRLRRV
SALFARLEKDRNFNYFWVRCAKLVCVTLFAVHCAGCFYYLIAVHYPDPKRTWIGVAMDDFLNQSLWIRYVTSIYWSITTLTTVGYGDLHP
ENTREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPARLQDQMLAHLCLKFRTDSEGLQQQETLESLP
KAIRSSVSHFLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLVVLKNGVEQVVGEVRAGDLCGE
MGFFVKASTIYSTNEETVPATSMNRTTFLNIVQANVGDGTIIMNNLLQHLKEMKNPIMEGVLLETEHMLARGRMDLPLTLCFATLRSDDL
LLHHLLKRGLDPNESDNNGRSALHIAASKGIENCVVLLLDFGADPNSRDSEGNVPLWEAIMGKHESVIQLLVDNGAKLSAGDVGHFACVA
VEQNNLSLLKEIVRYGGDVTLPKINGSSALHVAVCEGNIEIVKYLLDRGANVDQPDEHNWTPRDLAEQQGHEDIKELFESRVMMRTRSVD
PIPEERGVRFLGRFKSEPTISPASHGVSFLGLDGSLGRSRPRRRSNNFHNSLFGIMSAKQTNEHDVLLSANDTNVSITTTKTYAPRVIVC
CPEKGDNGGKLILLPQSFKELLQIGSSRYGISQAKVVSKDGAEIDEIELIRDGDRLVFVRDKENNIDEAKSS

SignalP predicts non-secretion with a score of 0.134

IPR005821 Ion transport protein
IPR003938 EAG/ELK/ERG potassium channel
IPR002110 Ankyrin
IPR013099 Ion transport 2
IPR005820 Cation channel, non-ligand gated
IPR000595 Cyclic nucleotide-binding
IPR001093 IMP dehydrogenase/GMP reductase

Prediction based on longest six frame method

>SGN-P256662 (889 Aa)

FYFFRVMGDNRGLGVFGVSMCGAAQEIEQLSRESSHYSLSTGILPSLGARSNRRVKLKRFIISPYDRQYRLWETFLVVLVVYTAWVSPFE
FGFLGKPAGPLAKTDNVVNGFFAIDIILTFFVAFLDRTTYLLVDEHKKIAWKYMSTWFLFDVISTIPSELAVKISPKPLRQYGLFNMLRL
WRLRRVSALFARLEKDRNFNYFWVRCAKLVCVTLFAVHCAGCFYYLIAVHYPDPKRTWIGVAMDDFLNQSLWIRYVTSIYWSITTLTTVG
YGDLHPENTREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPARLQDQMLAHLCLKFRTDSEGLQQQE
TLESLPKAIRSSVSHFLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLVVLKNGVEQVVGEVRA
GDLCGEIGVLCYRPQLFTVRTKRLCQLLRMNRTTFLNIVQANVGDGTIIMNNLLQHLKEMKNPIMEGVLLETEHMLARGRMDLPLTLCFA
TLRSDDLLLHHLLKRGLDPNESDNNGRSALHIAASKGIENCVVLLLDFGADPNSRDSEGNVPLWEAIMGKHESVIQLLVDNGAKLSAGDV
GHFACVAVEQNNLSLLKEIVRYGGDVTLPKINGSSALHVAVCEGNIEIVKYLLDRGANVDQPDEHNWTPRDLAEQQGHEDIKELFESRVM
MRTRSVDPIPEERGVRFLGRFKSEPTISPASHGVSFLGLDGSLGRSRPRRRSNNFHNSLFGIMSAKQTNEHDVLLSANDTNVSITTTKTY
APRVIVCCPEKGDNGGKLILLPQSFKELLQIGSSRYGISQAKVVSKDGAEIDEIELIRDGDRLVFVRDKENNIDEAKSS

SignalP predicts non-secretion with a score of 0.233

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101379	Ankyrin	460
2	118883	Ion transport - Molecular Function: ion channel activity (GO:0005216) - Biological Process: ion transport (GO:0006811) - Cellular Component: membrane (GO:0016020) K+ channel pore region - Molecular Function: potassium channel activity (GO:0005267) - Biological Process: potassium ion transport (GO:0006813) - Cellular Component: membrane (GO:0016020) Cyclic nucleotide-binding EAG/ELK/ERG potassium channel - Molecular Function: voltage-gated potassium channel activity (GO:0005249) - Biological Process: potassium ion transport (GO:0006813) - Cellular Component: membrane (GO:0016020)	27
5	129420	Ion transport - Molecular Function: ion channel activity (GO:0005216) - Biological Process: ion transport (GO:0006811) - Cellular Component: membrane (GO:0016020) K+ channel pore region - Molecular Function: potassium channel activity (GO:0005267) - Biological Process: potassium ion transport (GO:0006813) - Cellular Component: membrane (GO:0016020) Cyclic nucleotide-binding EAG/ELK/ERG potassium channel - Molecular Function: voltage-gated potassium channel activity (GO:0005249) - Biological Process: potassium ion transport (GO:0006813) - Cellular Component: membrane (GO:0016020)	22

Preceding Unigenes (1)

Unigene	Build
SGN-U227651	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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