Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U586981 in the current build, Tomato 200607 #2

Unigene SGN-U335491

Unigene Basic Information

Unigene ID:	SGN-U335491
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	335491
mRNA sequence:	Length: 2916 bp

>SGN-U335491 Tomato 200607 #1 (1 members)
GGCCTAAAAGCAACTTCAGTCTGAAAAGGGGGAAGTTGGGGAACTGAATTTGTCCCTATAGTATTTGTATCTGGTCCATTATTTTACCGG
AATATTCCGATCGCCGGACGACAAAAAGCCATCCATTTCCTCCATCTCCGGCAACTGGATGACTTCTAGAAAGAGAATAAACCAAGTAGT
TCAAGCTGCAATTTGTTAAAATCAGAGTTTGGTAGGGTTTATTTTGACTTTGATATTGTTAGGATTCTCCATGGAAGTACCTGTTAGACG
TTCGAATTATGCAATATTACAGCAGCAACCACCATACGATGAGTTTAATTCAGATGAGAAGAGCAAAAGTAGAGGTGATAAGGGATTATA
TTGGGACTTGATTGATCGCCGAAAAGGTACGACGCCGTTTCAGGCCTCGATTGTGTTACCGACGCAGTCAAGTGAAGGTAGCTTTGCTGA
AAGTTCCATTTCTGGAGTTTCATTTGGGTATATGAATGCTTATTCAGATGTTGGAGGTTCGTTGTCGAAAAGTTGGGCTCAACAGACGGA
GGAGAGCTACCAGCTGCAGTTAACGTTAGCTCTGAGGATCTCTACTGAAGCAACCTGCGCTGATGATCCCAATTTATTGGATTATGTGCC
AGATGAATCAGTATCCCATGCTTCAGCTTCATCTGCATCCGTGGAGGCAATGTCTCATAGATTCTGGGTAAATGGGAGCTTATCGTACTT
TGACAAAGTCCCCGATGGATTTTATTTCATTCAAGGGATGGATCCATATATTTGGACAGTCTGCTCAGATCTGCAAGAAAGTGGTCGTAT
CCCATCAATTGAATCCTTGATGGCTGTTGATCCCTCTGTAGTACCATCAGTTGAAGTAATTTTGATTGATCGGCAAAGTGATCCCAGGTT
AAAGGAACTACAAAATCGAATCCATAGCATGTATCGTAGTTGCAACACCACAAAAGAAGTGGTTGATCAGCTTGCAAAGTTGGTTTGCAA
TCACATGGGAGGCGCAGCTTCTGTCGGAGAAGGTGACTTCATTCCTATCTGGAAGGAGTGCTGTAATGACCTGAAGGATTGTCTAGGATG
TTTTGTGTTTCCCATTGGTAGCCTTTCTGTTGGACTTTGTAGACATCGCACGTTGCTGTTTAAAGTTCTGGCGGACATCATTGATTTACC
ATGTCGAATTGCCAGAGGATGTAAATATTGTAAAGAATCCGATGCTTTCTCATGTCTAGTTCGGTTTGGCCTTGACAGGGAATACTTGGT
TGATTTGATTCGGGATCCAGGATGTTTATATGAACCAAATTCATTGCTCAATGGTCCATCTTCCATCTCAATTCCTTCACCATTGCGCCT
TCCGAGATTTGGACAAGTTGAACCTGCCATGGATTTCACGTCATTCGCTAAACAGTATTTTTCGGATTGTCTATCACTTAATCTGGCCTT
TGATGATTCTTCAGCAGGAACTGCAGTTGATGGGGATGCTGGACAAACGGACAGAAGTTCCATGGATAAAAGCAGTGCAGTTCCTAGTTC
AAGCAATCGTGATGAAGTTTCACGGCTACCTTTGCCTTCAATAAATGCATGGAACAAGGGATGTGATAAAGGCTCTCAACTTCCTGCAAA
ATATCATCCTCCAAATATGTCGATCTCAATGAGCCAGGAAAAGGATTTGATTCATTTGAAGAATGTCCCTCCAATTAGGTATGTAGATGC
TCACCTGATTGCAATATCTGAGGCAAGGACAGATACCATTAATGACCAGAGGTACTTTGAGGGAGTAGGGAGACTTGCTCCTGCTAAACC
AAGCCGAGGACTTGTTCTTGATGTAGAAGATCTGGATATTCCCTGGAATGATCTGGTTCTGAAGGAAAGAATTGGGGCAGGGTCTTTTGG
GACTGTTCACCGTGCTGACTGGAATGGCTCTGATGTTGCTGTGAAAATTCTCATGGAACAGGATTTTCATGCTGAGCGATACAAGGAATT
TTTGCAAGAGGTTGCAATTATGAAGCGGTTGCGACATCCAAATATAGTGCTTTTCATGGGTGCTGTTACTGAGCCACCAAACTTGTCGAT
AGTTACAGAATATTTATCAAGAGGTAGCCTATATAGGCTTCTTCATAAACCTGGTGCGAGAGAGGTATTGGATGAAAAACGTCGGTTGTG
TATGGCTTACGATGTGGCAAAGGGGATGAATTATCTTCATAAACGCAAACCACCTGTTGTTCACAGAGATTTAAAATCTCCAAATCTTTT
AGTGGATACAAAATATACAGTGAAGGTCTGTGATTTTGGTCTTTCTCGATTAAAAGCTAATACATTTTTGTCATCAAAGTCAGCTGCCGG
GACTCCAGAATGGATGGCACCTGAAGTTCTCCGTGATGAGCCGTCAAATGAGAAATCTGATATATACAGCTTTGGTGTCATCTTGTGGGA
GCTGGCAACGTTGCAACAACCTTGGAGTAATTTGAACCCACCACAGGTAGTAGCAGCTGTTGGCTTTAAGGGTATGAGGCTTGAAATTCC
ACGTGACTTGAATCATCCGGTGACAACTATTATTGAAGCTTGCTGGGTGAATGAGCCGTGGAAACGCCCCTCTTTTTCTACTATCATGGA
TATGTTGAAACCGCTCATATAACTCTTGCAACACAACCAGATTGTACAGACATGCAGTTCCTCACGTAAATGCTGTAGTAAATGCTTGTA
TTCATACAGGAGAAACATTTGCACTTGGTATTTGGCTTAGTGATGATGTTGATGCTAGCAATATGAGTTTCTGCATCTGTCCAGGATTGA
TTTTGTATATACAAGAACTATAACAGGACGTTGTAATATATACGTAAATAATATTCTCTTCGGCGGCTAAATAAGCTAGCAATCTTTTCT
CAATGATGATCACAATTAACAATTTTTGGTGGCCCT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ctr4	CTR1-like protein kinase-4	ethylene signal transduction

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E747471
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P137898 (936 Aa)

PKSNFSLKGGSWGTEFVPIVFVSGPLFYRNFRSPDDKKPSISSISGNWMTSRKRINQVVQAAICXNQSLVGFILTLILLGFSMEVPVRRS
NYAILQQQPPYDEFNSDEKSKSRGDKGLYWDLIDRXKRYDAVSGLDCVTDESSEGSFAESSISGVSFGYMNAYSDVGGSLSKSWAQQTEE
SYQLQLTLALRISTEATCADDPNLLDYVPDESVSHASASSASVEAMSHRFWVNGSLSYFDKVPDGFYFIQGMDPYIWTVCSDLQESGRIP
SIESLMAVDPSVVPSVEVILIDRQSDPRLKELQNRIHSMYRSCNTTKEVVDQLAKLVCNHMGGAASVGEGDFIPIWKECCNDLKDCLGCF
VFPIGSLSVGLCRHRTLLFKVLADIIDLPCRIARGCKYCKESDAFSCLVRFGLDREYLVDLIRDPGCLYEPNSLLNGPSSISIPSPLRLP
RFGQVEPAMDFTSFAKQYFSDCLSLNLAFDDSSAGTAVDGDAGQTDRSSMDKSSAVPSSSNRDEVSRLPLPSINAWNKGCDKGSQLPAKY
HPPNMSISMSQEKDLIHLKNVPPIRYVDAHLIAISEARTDTINDQRYFEGVGRLAPAKPSRGLVLDVEDLDIPWNDLVLKERIGAGSFGT
VHRADWNGSDVAVKILMEQDFHAERYKEFLQEVAIMKRLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLYRLLHKPGAREVLDEKRRLCM
AYDVAKGMNYLHKRKPPVVHRDLKSPNLLVDTKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDIYSFGVILWEL
ATLQQPWSNLNPPQVVAAVGFKGMRLEIPRDLNHPVTTIIEACWVNEPVETPLFFYYHGYVETAHITLATQPDCTDMQFLTVNAVVNACI
HTGETFALGIWLSDDVDASNMSFCICPGLILYIQEL

SignalP predicts non-secretion with a score of 0.139

IPR002290 Serine/threonine protein kinase
IPR001093 IMP dehydrogenase/GMP reductase
IPR008271 Serine/threonine protein kinase, active site
IPR000719 Protein kinase
IPR001245 Tyrosine protein kinase

Prediction based on longest six frame method

>SGN-P264928 (810 Aa)

NQSLVGFILTLILLGFSMEVPVRRSNYAILQQQPPYDEFNSDEKSKSRGDKGLYWDLIDRRKGTTPFQASIVLPTQSSEGSFAESSISGV
SFGYMNAYSDVGGSLSKSWAQQTEESYQLQLTLALRISTEATCADDPNLLDYVPDESVSHASASSASVEAMSHRFWVNGSLSYFDKVPDG
FYFIQGMDPYIWTVCSDLQESGRIPSIESLMAVDPSVVPSVEVILIDRQSDPRLKELQNRIHSMYRSCNTTKEVVDQLAKLVCNHMGGAA
SVGEGDFIPIWKECCNDLKDCLGCFVFPIGSLSVGLCRHRTLLFKVLADIIDLPCRIARGCKYCKESDAFSCLVRFGLDREYLVDLIRDP
GCLYEPNSLLNGPSSISIPSPLRLPRFGQVEPAMDFTSFAKQYFSDCLSLNLAFDDSSAGTAVDGDAGQTDRSSMDKSSAVPSSSNRDEV
SRLPLPSINAWNKGCDKGSQLPAKYHPPNMSISMSQEKDLIHLKNVPPIRYVDAHLIAISEARTDTINDQRYFEGVGRLAPAKPSRGLVL
DVEDLDIPWNDLVLKERIGAGSFGTVHRADWNGSDVAVKILMEQDFHAERYKEFLQEVAIMKRLRHPNIVLFMGAVTEPPNLSIVTEYLS
RGSLYRLLHKPGAREVLDEKRRLCMAYDVAKGMNYLHKRKPPVVHRDLKSPNLLVDTKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMA
PEVLRDEPSNEKSDIYSFGVILWELATLQQPWSNLNPPQVVAAVGFKGMRLEIPRDLNHPVTTIIEACWVNEPWKRPSFSTIMDMLKPLI

SignalP predicts secretion with a score of 0.713

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118442	Tyrosine protein kinase - Molecular Function: protein-tyrosine kinase activity (GO:0004713) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	149
5	129387	Tyrosine protein kinase - Molecular Function: protein-tyrosine kinase activity (GO:0004713) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	23

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer