Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U590975 in the current build, Tomato 200607 #2

Unigene SGN-U343370

Unigene Basic Information

Unigene ID:	SGN-U343370
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	343370
mRNA sequence:	Length: 1045 bp

>SGN-U343370 Tomato 200607 #1 (1 members)
AGAACAAAGGAAGATAGTAAGTAATGAATATGAAGGGAGTTTTAGTTGCTTTTGTTTTGATTAATTTGTCAATATTGGCAAGTTGTGGGG
CTCCAAGGAAGGTAATTGATGTGCCTTTTTGGAACAACTATGAACCAAGTTGGTCTAGTCACCATATTAAGTACCTTAATGGTGGTACTA
CGGCTGAACTTCTTCTTGACAAATCCTCTGGAACTGGATTTCAATCAAAGAGATCGTATCTATTTGGTCATTTCAGCATGAAAATGAAGC
TTGTTGGAGGAGATTCTGCTGGTGTTGTCACTGCTTTTTATTTATCATCGACTAATGCTGAACACGATGAGATAGATTTCGAATTCCTCG
GGAATAGAACCGGTCAGCCATACATATTGCAGACTAATGTGTTCACAGGAGGCAAAGGAGACAGAGAACAGAGGATCTATCTTTGGTTTG
ATCCAACCAAGGACTTTCATTCATATTCTGTTCTTTGGAACACTTACCAAATTGCGATTTTTGTGGATGATGTCCCAATAAGAGTATTCA
AGAATTCAAAAGACATAGGAGTGAAATTTCCGTTCAATCAGCCAATGAAGATCTACTCAAGCCTATGGAACGCGGATGATTGGGCTACAA
GAGGAGGGTTAGAGAAAACTAATTGGTCTGGGGCGCCATTCATCGCTTCCTATACTTCATTCCACATTGATGGATGTGAGGCTGTCACAC
CACAAGAGGTACAAGTTTGTAACACCAATGGCATGAAATGGTGGGATCAAAAGGCTTTCCAAGATTTAGATGGCCCTGAATATAGAAAAC
TTCATAGGGTTAGACAAAATTTCNCAATATATAACTATTGTACTGATAGAAAAAGGTACCCTACACTTCCTCTAGAGTGTACAAGGGATA
GAGATCTTTAATTAGTTCTTATTTATATGGGGGCATTTTTCATTTACTCTTTATATAAAAACTAATCCAGTTTGTATGGAGACGAATTCA
AAATTATAAAATTTGGACTGTATTGAAGTTCTGAATATGTCAAATTAAAGATTTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
xth4	xyloglucan endotransglucosylase-hydrolase 4	xyloglucan endotransglucosylase-hydrolase

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E747239
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101462	Xyloglucan endo-transglycosylase C-terminal - Cellular Component: cell wall (GO:0005618) - Biological Process: glucan metabolism (GO:0006073) - Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762) - Cellular Component: apoplast (GO:0048046) Concanavalin A-like lectin/glucanase subgroup Glycoside hydrolase family 16 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Concanavalin A-like lectin/glucanase	129
2	118454	Glycoside hydrolase family 16 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Xyloglucan endo-transglycosylase C-terminal - Cellular Component: cell wall (GO:0005618) - Biological Process: glucan metabolism (GO:0006073) - Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762) - Cellular Component: apoplast (GO:0048046) Concanavalin A-like lectin/glucanase subgroup Concanavalin A-like lectin/glucanase	122
5	128954	Glycoside hydrolase family 16 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Xyloglucan endo-transglycosylase C-terminal - Cellular Component: cell wall (GO:0005618) - Biological Process: glucan metabolism (GO:0006073) - Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762) - Cellular Component: apoplast (GO:0048046) Concanavalin A-like lectin/glucanase subgroup Concanavalin A-like lectin/glucanase	122

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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